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BaseInfo

ncRNA ID	novel_zma_miR3927
Species	Zea mays
Class	miRNA
Genome position	Chr9:9841136-9841182 [+]
Reference genome	RefGen_v4
Source	SRR2287159
Length	23
Mature sequence(if miRNA)	1 - UGCCCUCUGCACAGGGGCGGACA - 23
Stem-loop(if miRNA)	--    C  U    -   -G    A   UGCC UC GCAC AGG  GCGG C   |||| || |||| |||  |||| A   ACGG AG CGUG UCC  CGCC G GC    -  -    G   GA    U
Stem-loop sequence	UGCCCUCUGCACAGGGGCGGACAGUCCGCAGCCUGGUGCGAGGCACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ067064.1	ncRNA:23   ACAGGCGGGGACACGUCUCCCGU   1   *|||||||||||||||||||||| targets:38   CGUCCGCCCCUGUGCAGAGGGCA   60 Target Full Sequence	0.0	TSA: Zea mays contig02698, mRNA sequence	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:23   ACAGGCGGGGACACGUCUCCCGU   1   *|||||||||||||||||||||| targets:1350   CGUCCGCCCCUGUGCAGAGGGCA   1372 Target Full Sequence	0.0	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
BT088349.1	ncRNA:23   ACAGGCGGGGACACGUCUCCCGU   1   *|||||||||||||||||||||| targets:1350   CGUCCGCCCCUGUGCAGAGGGCA   1372 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:23   ACAGGCGGGGACACGUCUCCCGU   1   *||||||||||||*||||||||| targets:2793   CGUCCGCCCCUGUUCAGAGGGCA   2815 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
BT039774.1	ncRNA:23   ACAGGCGGGGACACGUCUCCCGU   1   ||-|*||=||||||||||||||| targets:497   UG-CAGCUCCUGUGCAGAGGGCA   518 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0043M03 mRNA, complete cds	NA	coding protein	psRNATarget
BT017739.1	ncRNA:23   ACAGGCGGGGACACGUCUCCCGU   1   ||-|*||=||||||||||||||| targets:508   UG-CAGCUCCUGUGCAGAGGGCA   529 Target Full Sequence	2.0	Zea mays clone EL01N0449B09.c mRNA sequence	NA	coding protein	psRNATarget
NM_001155639.2	ncRNA:23   ACAGGCGGGGACACGUCUCCCGU   1   ||-|*||=||||||||||||||| targets:518   UG-CAGCUCCUGUGCAGAGGGCA   539 Target Full Sequence	2.0	Zea mays Methionyl-tRNA formyltransferase (pco129446), mRNA	NA	coding protein	psRNATarget
EU962122.1	ncRNA:23   ACAGGCGGGGACACGUCUCCCGU   1   ||-|*||=||||||||||||||| targets:513   UG-CAGCUCCUGUGCAGAGGGCA   534 Target Full Sequence	2.0	Zea mays clone 240364 methionyl-tRNA formyltransferase mRNA, complete cds	NA	coding protein	psRNATarget