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BaseInfo

ncRNA ID	novel_zma_miR3926
Species	Zea mays
Class	miRNA
Genome position	Chr1:295102592-295102656 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	42 - UUGAGAACUCCAUUUUUCCAAGGG - 65
Stem-loop(if miRNA)	--   AG                 GG         UUG  AACUCCAUUUUUCCAAG  AAAAUGA   |||  |||||||||||||||||  ||||||A   AAC  UUGGGGUAAAAGGGUUC  UUUUAUC CA   CU                 UU
Stem-loop sequence	UUGAGAACUCCAUUUUUCCAAGGGAAAAUGAACUAUUUUUUCUUGGGAAAAUGGGGUUUCCAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008658779.2	ncRNA:24   GGGAACCUUUUUACCUCAAGAGUU   1   ||||||||||||||||||||*||| targets:1936   CCCUUGGAAAAAUGGAGUUCCCAA   1959 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103636424 (LOC103636424), mRNA	NA	coding protein	psRNATarget
EU960273.1	ncRNA:24   GGGAACCUUUUUACCUCAAGAGUU   1   =|||||||||||||||||||*||| targets:766   UCCUUGGAAAAAUGGAGUUCACAA   789 Target Full Sequence	1.5	Zea mays clone 223065 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149998.1	ncRNA:24   GGGAACCUUUUUACCUCAAGAGUU   1   =|||||||||||||||||||*||| targets:766   UCCUUGGAAAAAUGGAGUUCACAA   789 Target Full Sequence	1.5	Zea mays uncharacterized LOC100276138 (LOC100276138), mRNA	NA	coding protein	psRNATarget
BT067132.1	ncRNA:24   GGGAACCUUUUUACCUCAAGAGUU   1   ||=|||||||||||||||||*||| targets:1237   CCUUUGGAAAAAUGGAGUUCCCAA   1260 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0204M05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176059.1	ncRNA:24   GGGAACCUUUUUACCUCAAGAGUU   1   ||=|||||||||||||||||*||| targets:1237   CCUUUGGAAAAAUGGAGUUCCCAA   1260 Target Full Sequence	1.5	Zea mays putative coatomer beta subunit family protein (LOC100383405), mRNA	NA	coding protein	psRNATarget
XM_008660641.2	ncRNA:24   GGGAACCUUUUUACCUCAAGAGUU   1   ||=|||||||||||||||||*||| targets:3176   CCUUUGGAAAAAUGGAGUUCCCAA   3199 Target Full Sequence	1.5	PREDICTED: Zea mays putative coatomer beta subunit family protein (LOC100383405), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020552563.1	ncRNA:24   GGGAACCUUUUUACCUCAAGAGUU   1   |||||||=||||||||||||*||| targets:446   CCCUUGGGAAAAUGGAGUUCCCAA   469 Target Full Sequence	2.5	PREDICTED: Zea mays probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 (LOC103653427), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT084854.2	ncRNA:24   GGGAACCUUUUUACCUCAAGAGUU   1   |=||||*||||||||||||*|||| targets:507   CUCUUGAAAAAAUGGAGUUGUCAA   530 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0193D01 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658839.2	ncRNA:24   GGGAACCUUUUUACCUCAAGAGUU   1   =||*|||=||||||||||||*||| targets:1220   UCCGUGGGAAAAUGGAGUUCCCAA   1243 Target Full Sequence	2.5	PREDICTED: Zea mays protein STRICTOSIDINE SYNTHASE-LIKE 10 (LOC103636496), mRNA	NA	coding protein	psRNATarget
EZ071949.1	ncRNA:24   GGGAACCUUUUUACCUCAAGAGUU   1   |||**||=||||||||||||*||| targets:138   CCCAAGGGAAAAUGGAGUUCCCAA   161 Target Full Sequence	2.5	TSA: Zea mays contig07586, mRNA sequence	NA	coding protein	psRNATarget
EU950812.1	ncRNA:24   GGGAACCUUUUUACCUCAAGAGUU   1   |*|**||=|||||||||||||=|| targets:323   CACAAGGGAAAAUGGAGUUCUUAA   346 Target Full Sequence	2.5	Zea mays clone 623174 mRNA sequence	NA	coding protein	psRNATarget