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BaseInfo

ncRNA ID	novel_zma_miR3922
Species	Zea mays
Class	miRNA
Genome position	Chr1:295102820-295102874 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	32 - AUUUCUAUUUUCCUAAGGGAAAAU - 55
Stem-loop(if miRNA)	---A    U                AUA     UUUC AUUUUCCUAAGGGAAA   A     |||| ||||||||||||||||   A     AAAG UAAAAGGGUUCCCUUU   C CCUA    -                AAU
Stem-loop sequence	AUUUCUAUUUUCCUAAGGGAAAAUAAACUAAUUUCCCUUGGGAAAAUGAAAAUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020541969.1	ncRNA:24   UAAAAGGGAAUCCUUUUAUCUUUA   1   |||||=||||=||||||||||||| targets:804   AUUUUUCCUUGGGAAAAUAGAAAU   827 Target Full Sequence	2.0	PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ071949.1	ncRNA:24   UAAAAGGGAAUCCUUUUAUCUUUA   1   ||||||||||=|||||||||=||| targets:114   AUUUUCCCUUGGGAAAAUAGGAAU   137 Target Full Sequence	2.5	TSA: Zea mays contig07586, mRNA sequence	NA	coding protein	psRNATarget
XM_008646834.2	ncRNA:24   UAAAAGGGAAUCCUUUUAUCUUUA   1   |||||=||*||||||||||||||| targets:4166   AUUUUUCCAUAGGAAAAUAGAAAU   4189 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC103626423), mRNA	NA	coding protein	psRNATarget
XM_020552563.1	ncRNA:24   UAAAAGGGAAUCCUUUUAUCUUUA   1   ||||||||||*|||||||||=||| targets:422   AUUUUCCCUUUGGAAAAUAGGAAU   445 Target Full Sequence	2.5	PREDICTED: Zea mays probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 (LOC103653427), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU957492.1	ncRNA:24   UAAAAGGGAAUCCUUUUAUCUUUA   1   |*||||||||=||||||||||||| targets:1746   AAUUUCCCUUGGGAAAAUAGAAAU   1769 Target Full Sequence	1.0	Zea mays clone 1594874 mRNA sequence	NA	coding protein	psRNATarget
EU960273.1	ncRNA:24   UAAAAGGGAAUCCUUUUAUCUUUA   1   ||||||||||=||||||*|||||| targets:742   AUUUUCCCUUGGGAAAACAGAAAU   765 Target Full Sequence	2.5	Zea mays clone 223065 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149998.1	ncRNA:24   UAAAAGGGAAUCCUUUUAUCUUUA   1   ||||||||||=||||||*|||||| targets:742   AUUUUCCCUUGGGAAAACAGAAAU   765 Target Full Sequence	2.5	Zea mays uncharacterized LOC100276138 (LOC100276138), mRNA	NA	coding protein	psRNATarget
XM_020550095.1	ncRNA:24   UAAAAGGGAAUCCUUUUAUCUUUA   1   |||||*|=||=||||||||||||| targets:224   AUUUUACUUUGGGAAAAUAGAAAU   247 Target Full Sequence	3.0	PREDICTED: Zea mays putative nuclease HARBI1 (LOC103649690), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660198.2	ncRNA:24   UAAAAGGGAAUCCUUUUAUCUUUA   1   |*||||||||=||||||||*|||| targets:971   AAUUUCCCUUGGGAAAAUAAAAAU   994 Target Full Sequence	2.5	PREDICTED: Zea mays ER membrane protein complex subunit 7-like protein (LOC100277198), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ069250.1	ncRNA:24   UAAAAGGGAAUCCUUUUAUCUUUA   1   |*||||||||=||||||||*|||| targets:124   AAUUUCCCUUGGGAAAAUAAAAAU   147 Target Full Sequence	2.5	TSA: Zea mays contig04885, mRNA sequence	NA	coding protein	psRNATarget