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BaseInfo

ncRNA ID osa-miR444d.2
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source miRBase
Length 21
Mature sequence(if miRNA) NA - UGCAGUUGCUGCCUCAAGCUU - NA
Stem-loop(if miRNA) AGUUAUU   CAU  U    C     A       A         U             G     --      
       GCA   GG GGCA CAAGC UGAGGCA CAACUGCAU ACUUGCAAGAAAG CACAA  AAUCAUU
       |||   || |||| ||||| ||||||| ||||||||| ||||||||||||| |||||  ||||||A
       CGU   CC CCGU GUUCG ACUCCGU GUUGACGUG UGAACGUUCUUUC GUGUU  UUAGUAG
--UAAAC   CUC  U    C     A       C         U             G     CA      
Stem-loop sequence AGUUAUUGCACAUGGUGGCACCAAGCAUGAGGCAACAACUGCAUUACUUGCAAGAAAGGCACAAAAUCAUUAGAUGAUUACUUGUGGCUUUCUUGCAAGUUGUGCAGUUGCUGCCUCAAGCUUGCUGCCUCCCUCUGCCAAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY345220.1
ncRNA:21   UUCGAACUCCGUCGUUGACGU   1
  |||||||||||||||||||||
targets:311   AAGCUUGAGGCAGCAACUGCA   331

0.0 Oryza sativa (japonica cultivar-group) transcription factor MADS23 mRNA, complete cds; alternatively spliced NA coding protein psRNATarget
AY224482.1
ncRNA:21   UUCGAACUCCGUCGUUGACGU   1
  |||||||||||||||||||||
targets:279   AAGCUUGAGGCAGCAACUGCA   299

0.0 Oryza sativa (japonica cultivar-group) isolate 29949 MADS box protein-like protein mRNA, complete cds NA coding protein psRNATarget
AY177702.1
ncRNA:21   UUCGAACUCCGUCGUUGACGU   1
  |||||||||||||||||||||
targets:279   AAGCUUGAGGCAGCAACUGCA   299

0.0 Oryza sativa (japonica cultivar-group) transcription factor MADS57 mRNA, complete cds NA coding protein psRNATarget
XM_015795358.1
ncRNA:21   UUCGAACUCCGUCGUUGACGU   1
  |||||||||||||||||||||
targets:440   AAGCUUGAGGCAGCAACUGCA   460

0.0 PREDICTED: Oryza sativa Japonica Group MADS-box transcription factor 23 (LOC4345644), transcript variant X1, mRNA MADS-box transcription factor 23(LOC4345644) coding protein psRNATarget
CT835372.1
ncRNA:21   UUCGAACUCCGUCGUUGACGU   1
  |||||||||||||||||||||
targets:576   AAGCUUGAGGCAGCAACUGCA   596

0.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI222G19, full insert sequence NA coding protein psRNATarget
AK241644.1
ncRNA:21   UUCGAACUCCGUCGUUGACGU   1
  |||||||||||||||||||||
targets:614   AAGCUUGAGGCAGCAACUGCA   634

0.0 Oryza sativa Japonica Group cDNA, clone: J065189M04, full insert sequence NA coding protein psRNATarget
XM_015771309.1
ncRNA:21   UUCGAACUCCGUCGUUGACGU   1
  |||||||||||||||||||||
targets:618   AAGCUUGAGGCAGCAACUGCA   638

0.0 PREDICTED: Oryza sativa Japonica Group MADS-box transcription factor 57 (LOC4330621), transcript variant X2, mRNA MADS-box transcription factor 57(LOC4330621) coding protein psRNATarget
XM_015771308.1
ncRNA:21   UUCGAACUCCGUCGUUGACGU   1
  |||||||||||||||||||||
targets:620   AAGCUUGAGGCAGCAACUGCA   640

0.0 PREDICTED: Oryza sativa Japonica Group MADS-box transcription factor 57 (LOC4330621), transcript variant X1, mRNA MADS-box transcription factor 57(LOC4330621) coding protein psRNATarget
XM_015795361.1
ncRNA:21   UUCGAACUCCGUCGUUGACGU   1
  |||||||||||||||||||||
targets:440   AAGCUUGAGGCAGCAACUGCA   460

0.0 PREDICTED: Oryza sativa Japonica Group MADS-box transcription factor 23 (LOC4345644), transcript variant X4, mRNA MADS-box transcription factor 23(LOC4345644) coding protein psRNATarget
XM_015795359.1
ncRNA:21   UUCGAACUCCGUCGUUGACGU   1
  |||||||||||||||||||||
targets:440   AAGCUUGAGGCAGCAACUGCA   460

0.0 PREDICTED: Oryza sativa Japonica Group MADS-box transcription factor 23 (LOC4345644), transcript variant X2, mRNA MADS-box transcription factor 23(LOC4345644) coding protein psRNATarget
XM_015795360.1
ncRNA:21   UUCGAACUCCGUCGUUGACGU   1
  |||||||||||||||||||||
targets:440   AAGCUUGAGGCAGCAACUGCA   460

0.0 PREDICTED: Oryza sativa Japonica Group MADS-box transcription factor 23 (LOC4345644), transcript variant X3, mRNA MADS-box transcription factor 23(LOC4345644) coding protein psRNATarget
AK102462.1
ncRNA:21   UUCGAACUCCGUCGUUGACGU   1
  =||||||||||||||=|||||
targets:1297   GAGCUUGAGGCAGCAGCUGCA   1317

1.5 Oryza sativa Japonica Group cDNA clone:J033094D12, full insert sequence NA coding protein psRNATarget
AK063453.1
ncRNA:21   UUCGAACUCCGUCGUUGACGU   1
  =||||||||||||||=|||||
targets:1370   GAGCUUGAGGCAGCAGCUGCA   1390

1.5 Oryza sativa Japonica Group cDNA clone:001-115-G04, full insert sequence NA coding protein psRNATarget
XM_015795193.1
ncRNA:21   UUCGAACUCCGUCGUUGACGU   1
  =||||||||||||||=|||||
targets:1383   GAGCUUGAGGCAGCAGCUGCA   1403

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4344731 (LOC4344731), mRNA uncharacterized LOC4344731(LOC4344731) coding protein psRNATarget
AK103332.1
ncRNA:21   UUCGAACUCCGUCGUUGACGU   1
  |||||*|||||||||||||||
targets:155   AAGCUAGAGGCAGCAACUGCA   175

1.0 Oryza sativa Japonica Group cDNA clone:J033125N22, full insert sequence NA coding protein psRNATarget
AK066992.1
ncRNA:21   UUCGAACUCCGUCGUUGACGU   1
  |||||*|||*|||||||||||
targets:205   AAGCUAGAGACAGCAACUGCA   225

2.5 Oryza sativa Japonica Group cDNA clone:J013089P17, full insert sequence NA coding protein psRNATarget

Reference

1 PMID:18353984
"Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)";
Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ;
Proc Natl Acad Sci U S A. 105:4951-4956(2008).
2 PMID:18312648
"Identification of novel and candidate miRNAs in rice by high throughput sequencing";
Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK;
BMC Plant Biol. 8:25(2008).
3 PMID:18323537
"Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa";
Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ;
Genome Res. 18:571-584(2008).
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