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BaseInfo

ncRNA ID	novel_zma_miR3919
Species	Zea mays
Class	miRNA
Genome position	Chr1:201963951-201964114 [+]
Reference genome	RefGen_v4
Source	SRR2287159;SRR2089703
Length	24
Mature sequence(if miRNA)	141 - GUCAAACGUUUGAUGUGACUCGGG - 164
Stem-loop(if miRNA)	-  -U   C              -ACCUCU  UCC     U        -  G     -UAAA     -      -A   AAAG  CC  GUC CAUCAAAUGUUUGA       GU   GGUAU AAAUGUAG UC GAUUA     ACUAA UUUGUC  GUC    A  ||  ||| ||||||||||||||       ||   ||||| |||||||| || |||||     ||||| ||||||  |||    U  GG  CAG GUAGUUUGCAAACU       UA   UCAUA UUUAUAUC GG UUGGU     UGAUU AAGCAG  CAG    U G  CU   U              GAAAAUU  UCC     C        U  G     UGACC     U      AG   AAAA
Stem-loop sequence	CCUGUCCCAUCAAAUGUUUGAACCUCUGUUCCGGUAUUAAAUGUAGUCGGAUUAUAAAACUAAUUUGUCAGUCAAAGAUUAAAAGACGAGACGAAUUUAGUCCAGUUGGUUGGGUCUAUAUUUCAUACUCCUAUUUAAAAGUCAAACGUUUGAUGUGACUCGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT084930.2	ncRNA:24   GGGCUCAGUGUAGUUUGCAAACUG   1   ||||=||||||||||=|||||||| targets:153   CCCGGGUCACAUCAAGCGUUUGAC   176 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0209B02 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008671848.2	ncRNA:24   GGGCUCAGUGUAGUUUGCAAACUG   1   ||||=||||||||||=|||||||| targets:670   CCCGGGUCACAUCAAGCGUUUGAC   693 Target Full Sequence	1.5	PREDICTED: Zea mays subtilisin-like protease SBT3.3 (LOC103647304), mRNA	NA	coding protein	psRNATarget
XM_020540529.1	ncRNA:24   GGGCUCAGUGUAGUUUGCAAACUG   1   ||||=||||||||||=|||||||| targets:1113   CCCGGGUCACAUCAAGCGUUUGAC   1136 Target Full Sequence	1.5	PREDICTED: Zea mays catalytic/ hydrolase (LOC100282156), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654002.2	ncRNA:24   GGGCUCAGUGUAGUUUGCAAACUG   1   |=||=||||||||||=|||||||| targets:713   CUCGGGUCACAUCAAGCGUUUGAC   736 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103632177), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008654001.2	ncRNA:24   GGGCUCAGUGUAGUUUGCAAACUG   1   |=||=||||||||||=|||||||| targets:712   CUCGGGUCACAUCAAGCGUUUGAC   735 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103632177), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY109009.1	ncRNA:24   GGGCUCAGUGUAGUUUGCAAACUG   1   |*=|**||||||||||||||||=| targets:1336   CAUGUUUCACAUCAAACGUUUGGC   1359 Target Full Sequence	2.5	Zea mays PCO062001 mRNA sequence	NA	coding protein	psRNATarget