Search result

BaseInfo

ncRNA ID novel_zma_miR3903
Species Zea mays
Class miRNA
Genome position Chr1:179703473-179703565 [+]
Reference genome RefGen_v4
Source SRR2287159;SRR2287160;SRR2287162;SRR2287163;SRR2287164;SRR2287165
Length 24
Mature sequence(if miRNA) 70 - AGGCAAAGUGUGGCAACUUAGGUA - 93
Stem-loop(if miRNA) --G    AUG                -------------        CG   A
   CUAA   UGCCACACUUUGCCUA             AGGUUAGU  UUC A
   ||||   ||||||||||||||||             ||||||||  ||| A
   GAUU   ACGGUGUGAAACGGAU             UCCAAUCA  AAG U
AUG    -CA                UGAAAAGACGGAU        AU   U
Stem-loop sequence GCUAAAUGUGCCACACUUUGCCUAAGGUUAGUCGUUCAAAUUGAAUAACUAACCUUAGGCAGAAAAGUUAGGCAAAGUGUGGCAACUUAGGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY109434.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |=||||||||||||||||||||||
targets:399   UGCCUAAGUUGCCACACUUUGCCU   422

0.0 Zea mays CL2997_-2 mRNA sequence NA coding protein psRNATarget
BT064583.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |||||*||||||||||||||||||
targets:1647   UACCUCAGUUGCCACACUUUGCCU   1670

1.0 Zea mays full-length cDNA clone ZM_BFc0185L15 mRNA, complete cds NA coding protein psRNATarget
EU960971.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |||||*||||||||||||||||||
targets:1717   UACCUCAGUUGCCACACUUUGCCU   1740

1.0 Zea mays clone 230073 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001150092.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |||||*||||||||||||||||||
targets:1717   UACCUCAGUUGCCACACUUUGCCU   1740

1.0 Zea mays uncharacterized LOC100276261 (LOC100276261), mRNA NA coding protein psRNATarget
JB163853.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |=|||||*||||||||||||||||
targets:19   UGCCUAACUUGCCACACUUUGCCU   42

1.0 Sequence 1517 from Patent EP2559767 NA coding protein psRNATarget
HI403392.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |=|||||*||||||||||||||||
targets:19   UGCCUAACUUGCCACACUUUGCCU   42

1.0 Sequence 1517 from Patent EP2074227 NA coding protein psRNATarget
LQ235522.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |=|||||*||||||||||||||||
targets:19   UGCCUAACUUGCCACACUUUGCCU   42

1.0 Sequence 1517 from Patent EP2985353 NA coding protein psRNATarget
EZ066409.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |=||||||||||||||||||*|||
targets:7   UGCCUAAGUUGCCACACUUUACCU   30

1.5 TSA: Zea mays contig02043, mRNA sequence NA coding protein psRNATarget
BT033837.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |=|||||*||||||||||||||||
targets:931   UGCCUAACUUGCCACACUUUGCCU   954

1.0 Zea mays full-length cDNA clone ZM_BFc0155O23 mRNA, complete cds NA coding protein psRNATarget
EU945170.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |=|||*||||||||||||||||||
targets:855   UGCCUCAGUUGCCACACUUUGCCU   878

1.0 Zea mays clone 243250 mRNA sequence NA coding protein psRNATarget
NM_001149797.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |||||||*|||=||||||||||||
targets:933   UACCUAACUUGUCACACUUUGCCU   956

2.5 Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA NA coding protein psRNATarget
EU958119.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |||||||*|||=||||||||||||
targets:933   UACCUAACUUGUCACACUUUGCCU   956

2.5 Zea mays clone 1674247 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001137099.2
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |=|||||*||||||||||||||||
targets:1419   UGCCUAACUUGCCACACUUUGCCU   1442

1.0 Zea mays KDEL-tailed cysteine endopeptidase CEP1 (cl903_-1), mRNA NA coding protein psRNATarget
AY109437.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |=|||||*||||||||||||||||
targets:1429   UGCCUAACUUGCCACACUUUGCCU   1452

1.0 Zea mays CL903_-1 mRNA sequence NA coding protein psRNATarget
EU966347.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |=|||*||||||||||||||||||
targets:1339   UGCCUCAGUUGCCACACUUUGCCU   1362

1.0 Zea mays clone 293813 strictosidine synthase 1 precursor, mRNA, complete cds NA coding protein psRNATarget
BT018862.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |=|||||*||||||||||||||||
targets:1049   UGCCUAACUUGCCACACUUUGCCU   1072

1.0 Zea mays clone EL01N0559E06.d mRNA sequence NA coding protein psRNATarget
BT043169.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |||||||||||*|||||||||||*
targets:1558   UACCUAAGUUGACACACUUUGCCA   1581

2.5 Zea mays full-length cDNA clone ZM_BFc0116O04 mRNA, complete cds NA coding protein psRNATarget
NM_001148844.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |||||||||||*|||||||||||*
targets:1558   UACCUAAGUUGACACACUUUGCCA   1581

2.5 Zea mays uncharacterized LOC100274485 (LOC100274485), mRNA NA coding protein psRNATarget
LQ235416.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |=|||||*|||=||||||||||||
targets:19   UGCCUAACUUGUCACACUUUGCCU   42

2.5 Sequence 1411 from Patent EP2985353 NA coding protein psRNATarget
JB163747.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |=|||||*|||=||||||||||||
targets:19   UGCCUAACUUGUCACACUUUGCCU   42

2.5 Sequence 1411 from Patent EP2559767 NA coding protein psRNATarget
HI403286.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |=|||||*|||=||||||||||||
targets:19   UGCCUAACUUGUCACACUUUGCCU   42

2.5 Sequence 1411 from Patent EP2074227 NA coding protein psRNATarget
JB163753.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |=|=|||*||||||||||||||||
targets:19   UGCUUAACUUGCCACACUUUGCCU   42

1.0 Sequence 1417 from Patent EP2559767 NA coding protein psRNATarget
LQ235422.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |=|=|||*||||||||||||||||
targets:19   UGCUUAACUUGCCACACUUUGCCU   42

1.0 Sequence 1417 from Patent EP2985353 NA coding protein psRNATarget
HI403292.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |=|=|||*||||||||||||||||
targets:19   UGCUUAACUUGCCACACUUUGCCU   42

1.0 Sequence 1417 from Patent EP2074227 NA coding protein psRNATarget
BT083952.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |==||||*||||||||||||||||
targets:1484   UGUCUAACUUGCCACACUUUGCCU   1507

1.0 Zea mays full-length cDNA clone ZM_BFb0057K24 mRNA, complete cds NA coding protein psRNATarget
XM_020540795.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |=|||||*||||||||=|||||||
targets:693   UGCCUAACUUGCCACAUUUUGCCU   716

2.5 PREDICTED: Zea mays BTB/POZ domain-containing protein NPY1 (LOC103632767), transcript variant X3, mRNA NA coding protein psRNATarget
EU955574.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |||||*||||||||||*|||||||
targets:127   UACCUCAGUUGCCACAAUUUGCCU   150

2.5 Zea mays clone 1537438 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001149469.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |||||*||||||||||*|||||||
targets:127   UACCUCAGUUGCCACAAUUUGCCU   150

2.5 Zea mays uncharacterized LOC100275382 (LOC100275382), mRNA NA coding protein psRNATarget
XM_008660020.2
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |==||||*|||||||||||||=||
targets:3008   UGUCUAACUUGCCACACUUUGUCU   3031

2.5 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008660020.2
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:3069   UGGCUAAAUGUGCCACACUUUGCCU   3093

3.0 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008660021.2
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |==||||*|||||||||||||=||
targets:3136   UGUCUAACUUGCCACACUUUGUCU   3159

2.5 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008660021.2
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:3197   UGGCUAAAUGUGCCACACUUUGCCU   3221

3.0 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020543539.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |==||||*|||||||||||||=||
targets:3143   UGUCUAACUUGCCACACUUUGUCU   3166

2.5 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020543539.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:3204   UGGCUAAAUGUGCCACACUUUGCCU   3228

3.0 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X6, mRNA NA coding protein psRNATarget
LQ238827.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  ||=||||*|-|||||||||||||||
targets:7   UAUCUAAAUGUGCCACACUUUGCCU   31

3.0 Sequence 4822 from Patent EP2985353 NA coding protein psRNATarget
JB167158.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  ||=||||*|-|||||||||||||||
targets:7   UAUCUAAAUGUGCCACACUUUGCCU   31

3.0 Sequence 4822 from Patent EP2559767 NA coding protein psRNATarget
HI406697.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  ||=||||*|-|||||||||||||||
targets:7   UAUCUAAAUGUGCCACACUUUGCCU   31

3.0 Sequence 4822 from Patent EP2074227 NA coding protein psRNATarget
BT083538.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  ||=||||*|-|||||||||||||||
targets:537   UAUCUAAAUGUGCCACACUUUGCCU   561

3.0 Zea mays full-length cDNA clone ZM_BFb0009D08 mRNA, complete cds NA coding protein psRNATarget
NM_001177034.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  ||=||||*|-|||||||||||||||
targets:537   UAUCUAAAUGUGCCACACUUUGCCU   561

3.0 Zea mays putative LRR receptor-like serine/threonine-protein kinase (LOC100384510), mRNA NA coding protein psRNATarget
XM_008645942.2
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  ||=||||*|-|||||||||||||||
targets:3175   UAUCUAAAUGUGCCACACUUUGCCU   3199

3.0 PREDICTED: Zea mays putative LRR receptor-like serine/threonine-protein kinase (LOC100384510), transcript variant X1, mRNA NA coding protein psRNATarget
EU968686.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |=|||||*||||||||||||*|||
targets:623   UGCCUAACUUGCCACACUUUACCU   646

2.5 Zea mays clone 323451 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT065161.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |=|||||*||||||||||||*|||
targets:606   UGCCUAACUUGCCACACUUUACCU   629

2.5 Zea mays full-length cDNA clone ZM_BFb0009L23 mRNA, complete cds NA coding protein psRNATarget
XM_020550436.1
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |=|||||*||||||||||||*|||
targets:641   UGCCUAACUUGCCACACUUUACCU   664

2.5 PREDICTED: Zea mays 14 kDa zinc-binding protein-like (LOC100277449), mRNA NA coding protein psRNATarget
XM_008660313.2
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |=*||||*||||||||||||||||
targets:710   UGGCUAACUUGCCACACUUUGCCU   733

1.0 PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008660311.2
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |=*||||*||||||||||||||||
targets:710   UGGCUAACUUGCCACACUUUGCCU   733

1.0 PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008660309.2
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |=*||||*||||||||||||||||
targets:710   UGGCUAACUUGCCACACUUUGCCU   733

1.0 PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008670840.2
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  |=*||||*||||||||||||||||
targets:2675   UGGCUAACUUGCCACACUUUGCCU   2698

1.0 PREDICTED: Zea mays ARM repeat superfamily protein (LOC103646122), transcript variant X1, mRNA NA coding protein psRNATarget
BT065116.1
ncRNA:24   AU-GGAUUCAACGGUGUGAAACGGA   1
  ||-|||*|*||||||||||||||||
targets:979   UAGCCUCACUUGCCACACUUUGCCU   1003

2.0 Zea mays full-length cDNA clone ZM_BFb0044I08 mRNA, complete cds NA coding protein psRNATarget
XM_008681572.2
ncRNA:24   AUGGAUUCAACGGUGUGAAACGGA   1
  *=|||||*||*|||||||||||||
targets:2403   AGCCUAACUUACCACACUUUGCCU   2426

2.0 PREDICTED: Zea mays uncharacterized LOC103654747 (LOC103654747), mRNA NA coding protein psRNATarget
EU945747.1
ncRNA:24   AUG--GAUUCA-ACGGUGUGAAACGGA   1
  ||=--||||*|-|||||||||||||||
targets:104   UAUGGCUAAAUGUGCCACACUUUGCCU   130

3.0 Zea mays clone 284493 mRNA sequence NA coding protein psRNATarget
EU974082.1
ncRNA:24   AUG--GAUUCA-ACGGUGUGAAACGGA   1
  ||=--||||*|-|||||||||||||||
targets:1090   UAUGGCUAAAUGUGCCACACUUUGCCU   1116

3.0 Zea mays clone 439268 mRNA sequence NA coding protein psRNATarget
EU963506.1
ncRNA:24   AUG--GAUUCA-ACGGUGUGAAACGGA   1
  ||=--||||*|-|||||||||||||||
targets:1585   UAUGGCUAAAUGUGCCACACUUUGCCU   1611

3.0 Zea mays clone 263419 COP9 signalosome complex subunit 3 mRNA, complete cds NA coding protein psRNATarget
NM_001156027.1
ncRNA:24   AUG--GAUUCA-ACGGUGUGAAACGGA   1
  ||=--||||*|-|||||||||||||||
targets:1585   UAUGGCUAAAUGUGCCACACUUUGCCU   1611

3.0 Zea mays uncharacterized LOC100283125 (pco080956), mRNA NA coding protein psRNATarget
XM_008662146.2
ncRNA:24   AUG--GAUUCA-ACGGUGUGAAACGGA   1
  ||=--||||*|-|||||||||||||||
targets:2643   UAUGGCUAAAUGUGCCACACUUUGCCU   2669

3.0 PREDICTED: Zea mays transcription factor bHLH74 (LOC103639394), transcript variant X1, mRNA NA coding protein psRNATarget
EZ061854.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:51   UGGCUAACUGUGCCACACUUUGCCU   75

3.0 TSA: Zea mays contig62976, mRNA sequence NA coding protein psRNATarget
LQ235569.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1564 from Patent EP2985353 NA coding protein psRNATarget
JB163900.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1564 from Patent EP2559767 NA coding protein psRNATarget
HI403439.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1564 from Patent EP2074227 NA coding protein psRNATarget
JB163758.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1422 from Patent EP2559767 NA coding protein psRNATarget
LQ235390.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1385 from Patent EP2985353 NA coding protein psRNATarget
JB163716.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1380 from Patent EP2559767 NA coding protein psRNATarget
JB163717.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1381 from Patent EP2559767 NA coding protein psRNATarget
HI403358.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1483 from Patent EP2074227 NA coding protein psRNATarget
JB163886.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1550 from Patent EP2559767 NA coding protein psRNATarget
JB163720.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1384 from Patent EP2559767 NA coding protein psRNATarget
LQ235386.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1381 from Patent EP2985353 NA coding protein psRNATarget
HI403297.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1422 from Patent EP2074227 NA coding protein psRNATarget
HI403256.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1381 from Patent EP2074227 NA coding protein psRNATarget
LQ235488.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1483 from Patent EP2985353 NA coding protein psRNATarget
JB163719.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1383 from Patent EP2559767 NA coding protein psRNATarget
LQ235389.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1384 from Patent EP2985353 NA coding protein psRNATarget
LQ235387.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1382 from Patent EP2985353 NA coding protein psRNATarget
HI403257.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1382 from Patent EP2074227 NA coding protein psRNATarget
HI403425.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1550 from Patent EP2074227 NA coding protein psRNATarget
JB163718.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1382 from Patent EP2559767 NA coding protein psRNATarget
LQ235555.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1550 from Patent EP2985353 NA coding protein psRNATarget
HI403258.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1383 from Patent EP2074227 NA coding protein psRNATarget
HI403260.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1385 from Patent EP2074227 NA coding protein psRNATarget
LQ235388.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1383 from Patent EP2985353 NA coding protein psRNATarget
JB163721.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1385 from Patent EP2559767 NA coding protein psRNATarget
JB163819.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1483 from Patent EP2559767 NA coding protein psRNATarget
JB163656.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1320 from Patent EP2559767 NA coding protein psRNATarget
LQ235325.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1320 from Patent EP2985353 NA coding protein psRNATarget
LQ235385.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1380 from Patent EP2985353 NA coding protein psRNATarget
HI403195.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1320 from Patent EP2074227 NA coding protein psRNATarget
LQ235427.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1422 from Patent EP2985353 NA coding protein psRNATarget
HI403259.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1384 from Patent EP2074227 NA coding protein psRNATarget
HI403255.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:18   UGGCUAACUGUGCCACACUUUGCCU   42

3.0 Sequence 1380 from Patent EP2074227 NA coding protein psRNATarget
EZ517203.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:99   UGGCUAACUAUGCCACACUUUGCCU   123

3.0 TSA: Zea mays cultivar W22 CL614Contig1.betc, mRNA sequence NA coding protein psRNATarget
EU967316.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:496   UGGCUAAAUGUGCCACACUUUGCCU   520

3.0 Zea mays clone 301383 diphthamide biosynthesis protein 3 mRNA, complete cds NA coding protein psRNATarget
DQ244265.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:722   UGGCUAAAUGUGCCACACUUUGCCU   746

3.0 Zea mays clone 4014 mRNA sequence NA coding protein psRNATarget
EU972213.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:1278   UGGCUAAAUGUGCCACACUUUGCCU   1302

3.0 Zea mays clone 377527 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT037664.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:1245   UGGCUAAAUAUGCCACACUUUGCCU   1269

3.0 Zea mays full-length cDNA clone ZM_BFb0186J07 mRNA, complete cds NA coding protein psRNATarget
NM_001154039.2
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:1992   UGGCUAAAUAUGCCACACUUUGCCU   2016

3.0 Zea mays Na+/H+ antiporter, probable CP0838 (IDP767), mRNA NA coding protein psRNATarget
EU955653.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:1993   UGGCUAAAUAUGCCACACUUUGCCU   2017

3.0 Zea mays clone 1541098 Na+/H+ antiporter, probable CP0838 mRNA, complete cds NA coding protein psRNATarget
XM_008683326.2
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:2142   UGGCUAAAUGUGCCACACUUUGCCU   2166

3.0 PREDICTED: Zea mays DUF1336 domain containing protein expressed (LOC100274268), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008667123.2
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:45   UGACUAAAUGUGCCACACUUUGCCU   69

3.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008667124.2
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:45   UGACUAAAUGUGCCACACUUUGCCU   69

3.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020546911.1
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:45   UGACUAAAUGUGCCACACUUUGCCU   69

3.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008667122.2
ncRNA:24   AUGGAUUCA-ACGGUGUGAAACGGA   1
  |=*||||*|-|||||||||||||||
targets:45   UGACUAAAUGUGCCACACUUUGCCU   69

3.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X1, mRNA NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.