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BaseInfo

ncRNA ID	novel_zma_miR3897
Species	Zea mays
Class	miRNA
Genome position	Chr8:149457914-149458046 [-]
Reference genome	RefGen_v4
Source	SRR2287159
Length	24
Mature sequence(if miRNA)	110 - AGGACUUGUUUGGGAGCAAGUGGA - 133
Stem-loop(if miRNA)	---A  A            C   U  -     A          A             UC        A     GG CUUGUUUGGGAG AAG GG AAUGA GGAGAUUGAG GGGCUAGAAUCCC  ACUGUUUA A     || |||||||||||| ||| || ||||| |||||||||| |||||||||||||  ||||||||     CC GAACAAACCCUC UUC CC UUACU CUUCUAACUU CCCGAUUUUAGGG  UGAUAAAU A UAUA  C            A   -  A     C          C             GA        U
Stem-loop sequence	AGGACUUGUUUGGGAGCAAGUGGAAUGAAGGAGAUUGAGAGGGCUAGAAUCCCUCACUGUUUAAAAUUAAAUAGUAGGGGAUUUUAGCCCCUUCAAUCUUCCUCAUUACCCUUACUCCCAAACAAGCCCAUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406027.1	ncRNA:24   AGGUGAACGAGGGUUUGUUCAGGA   1   |=||||||||||||||||||*||| targets:108   UUCACUUGCUCCCAAACAAGCCCU   131 Target Full Sequence	1.5	Sequence 4152 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238157.1	ncRNA:24   AGGUGAACGAGGGUUUGUUCAGGA   1   |=||||||||||||||||||*||| targets:108   UUCACUUGCUCCCAAACAAGCCCU   131 Target Full Sequence	1.5	Sequence 4152 from Patent EP2985353	NA	coding protein	psRNATarget
JB166488.1	ncRNA:24   AGGUGAACGAGGGUUUGUUCAGGA   1   |=||||||||||||||||||*||| targets:108   UUCACUUGCUCCCAAACAAGCCCU   131 Target Full Sequence	1.5	Sequence 4152 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001174804.1	ncRNA:24   AGGUGAACGAGGGUUUGUUCAGGA   1   |=||||||||||||||||||*||| targets:2644   UUCACUUGCUCCCAAACAAGCCCU   2667 Target Full Sequence	1.5	Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), mRNA	NA	coding protein	psRNATarget
BT062966.1	ncRNA:24   AGGUGAACGAGGGUUUGUUCAGGA   1   |=||||||||||||||||||*||| targets:2644   UUCACUUGCUCCCAAACAAGCCCU   2667 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0013E16 mRNA, complete cds	NA	coding protein	psRNATarget
BT061256.1	ncRNA:24   AGGUGAACGAGGGUUUGUUCAGGA   1   ||||||||||=|||||||*||||| targets:1903   UCCACUUGCUUCCAAACAUGUCCU   1926 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0127C16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008663899.2	ncRNA:24   AGGUGAACGAGGGUUUGUUCAGGA   1   |=||||||||||||||||||*||| targets:2732   UUCACUUGCUCCCAAACAAGCCCU   2755 Target Full Sequence	1.5	PREDICTED: Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008656913.2	ncRNA:24   AGGU-----GAACGAGGGUUUGUUCAGGA   1   ||||-----||||||||||||||*||||| targets:1984   UCCAAUUCUCUUGCUCCCAAACAUGUCCU   2012 Target Full Sequence	1.5	PREDICTED: Zea mays retrotransposon protein SINE subclass (LOC100286141), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008656912.2	ncRNA:24   AGGU-----GAACGAGGGUUUGUUCAGGA   1   ||||-----||||||||||||||*||||| targets:2050   UCCAAUUCUCUUGCUCCCAAACAUGUCCU   2078 Target Full Sequence	1.5	PREDICTED: Zea mays retrotransposon protein SINE subclass (LOC100286141), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008656914.2	ncRNA:24   AGGU-----GAACGAGGGUUUGUUCAGGA   1   ||||-----||||||||||||||*||||| targets:2058   UCCAAUUCUCUUGCUCCCAAACAUGUCCU   2086 Target Full Sequence	1.5	PREDICTED: Zea mays retrotransposon protein SINE subclass (LOC100286141), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020542191.1	ncRNA:24   AGGU-----GAACGAGGGUUUGUUCAGGA   1   ||||-----||||||||||||||*||||| targets:2151   UCCAAUUCUCUUGCUCCCAAACAUGUCCU   2179 Target Full Sequence	1.5	PREDICTED: Zea mays retrotransposon protein SINE subclass (LOC100286141), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008675809.2	ncRNA:24   AGGUGAACGAGGGUUUGUUCAGGA   1   ||||-|*||||||||||||||||| targets:3398   UCCA-UGGCUCCCAAACAAGUCCU   3420 Target Full Sequence	1.0	PREDICTED: Zea mays auxilin-related protein 1 (LOC103650168), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT019141.1	ncRNA:24   AGGU-----GAACGAGGGUUUGUUCAGGA   1   ||||-----||||||*|||||||||||=| targets:659   UCCAUUACUCUUGCUACCAAACAAGUCUU   687 Target Full Sequence	2.5	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
XM_008654031.2	ncRNA:24   AGGU-----GAACGAGGGUUUGUUCAGGA   1   ||||-----||||||=|||||||||*||| targets:1689   UCCAUUACUCUUGCUUCCAAACAAGCCCU   1717 Target Full Sequence	2.5	PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT035317.1	ncRNA:24   AGGU-----GAACGAGGGUUUGUUCAGGA   1   |=||-----||||||=|||||||||*||| targets:645   UUCAAUUGCCUUGCUUCCAAACAAGCCCU   673 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0054P02 mRNA, complete cds	NA	coding protein	psRNATarget
BT042276.1	ncRNA:24   AGGU-----GAACGAGGGUUUGUUCAGGA   1   |=||-----||||||=|||||||||*||| targets:655   UUCAAUUGCCUUGCUUCCAAACAAGCCCU   683 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0187F06 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008645432.2	ncRNA:24   AGGU-----GAACGAGGGUUUGUUCAGGA   1   |=||-----||||||=|||||||||*||| targets:900   UUCAAUUGCCUUGCUUCCAAACAAGCCCU   928 Target Full Sequence	2.5	PREDICTED: Zea mays Ubiquitin-conjugating enzyme E2 variant 1A (umc107b(croc)), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645431.2	ncRNA:24   AGGU-----GAACGAGGGUUUGUUCAGGA   1   |=||-----||||||=|||||||||*||| targets:902   UUCAAUUGCCUUGCUUCCAAACAAGCCCU   930 Target Full Sequence	2.5	PREDICTED: Zea mays Ubiquitin-conjugating enzyme E2 variant 1A (umc107b(croc)), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549567.1	ncRNA:24   AGGUGAACGAGGGUUUGUUCAGGA   1   |||*|||*||||||||||||*||| targets:1087   UCCCCUUACUCCCAAACAAGCCCU   1110 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100273482), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI406069.1	ncRNA:24   AGGU-----GAACGAGGGUUUGUUCAGGA   1   ||||-----|||*||||||||||||*||| targets:103   UCCAUUACUCUUCCUCCCAAACAAGCCCU   131 Target Full Sequence	2.5	Sequence 4194 from Patent EP2074227	NA	coding protein	psRNATarget
JB166530.1	ncRNA:24   AGGU-----GAACGAGGGUUUGUUCAGGA   1   ||||-----|||*||||||||||||*||| targets:103   UCCAUUACUCUUCCUCCCAAACAAGCCCU   131 Target Full Sequence	2.5	Sequence 4194 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238199.1	ncRNA:24   AGGU-----GAACGAGGGUUUGUUCAGGA   1   ||||-----|||*||||||||||||*||| targets:103   UCCAUUACUCUUCCUCCCAAACAAGCCCU   131 Target Full Sequence	2.5	Sequence 4194 from Patent EP2985353	NA	coding protein	psRNATarget
BT036654.1	ncRNA:24   AGGU-----GAACGAGGGUUUGUUCAGGA   1   ||||-----|||*||||||||||||*||| targets:1056   UCCAUUACUCUUCCUCCCAAACAAGCCCU   1084 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0128D05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001349849.1	ncRNA:24   AGGU-----GAACGAGGGUUUGUUCAGGA   1   ||||-----|||*||||||||||||*||| targets:889   UCCAUUACUCUUCCUCCCAAACAAGCCCU   917 Target Full Sequence	2.5	Zea mays uncharacterized LOC100194187 (LOC100194187), mRNA	NA	coding protein	psRNATarget
EU952717.1	ncRNA:24   AGGU-----GAACGAGGGUUUGUUCAGGA   1   ||||-----|||*||||||||||||*||| targets:889   UCCAUUACUCUUCCUCCCAAACAAGCCCU   917 Target Full Sequence	2.5	Zea mays clone 1287070 zinc finger protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008657468.2	ncRNA:24   AGGU-----GAACGAGGGUUUGUUCAGGA   1   ||==-----||||||=||||||||*|||| targets:3556   UCUGUUACUCUUGCUUCCAAACAAAUCCU   3584 Target Full Sequence	2.5	PREDICTED: Zea mays DExH-box ATP-dependent RNA helicase DExH10 (LOC103634889), mRNA	NA	coding protein	psRNATarget
AY104666.1	ncRNA:24   AGGU-GAACGAGGGUUUGUUCAGGA   1   ||=|-=||*||||||||||||*||| targets:753   UCUAAUUUCCUCCCAAACAAGCCCU   777 Target Full Sequence	2.5	Zea mays PCO121749 mRNA sequence	NA	coding protein	psRNATarget
EU945611.1	ncRNA:24   AGGU-GAACGAGGGUUUGUUCAGGA   1   ||=|-=||*||||||||||||*||| targets:1495   UCUAAUUUCCUCCCAAACAAGCCCU   1519 Target Full Sequence	2.5	Zea mays clone 279375 mRNA sequence	NA	coding protein	psRNATarget
XM_008683137.2	ncRNA:24   AGGU-GAACGAGGGUUUGUUCAGGA   1   ||=|-=||*||||||||||||*||| targets:4288   UCUAAUUUCCUCCCAAACAAGCCCU   4312 Target Full Sequence	2.5	PREDICTED: Zea mays Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (uaz275), transcript variant X1, mRNA	NA	coding protein	psRNATarget