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BaseInfo

ncRNA ID	novel_zma_miR3896
Species	Zea mays
Class	miRNA
Genome position	Chr8:149677631-149677694 [-]
Reference genome	RefGen_v4
Source	SRR2287159
Length	23
Mature sequence(if miRNA)	42 - UCUCUGCACAGGGGCGGACGGUU - 64
Stem-loop(if miRNA)	--    U    -   -G      G  U G        UCUC GCAC AGG  GCGGAC GU C CGGCCA   |||| |||| |||  |||||| || | |||||G   GGAG CGUG UCC  CGCCUG CA G GCCGGG UU    -    G   AG      G  - -
Stem-loop sequence	UCUCUGCACAGGGGCGGACGGUUCGCGGCCAGGGGCCGGACGGUCCGCGACCUGGUGCGAGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ067064.1	ncRNA:23   UUGGCAGGCGGGGACACGUCUCU   1   =|||||||||||||||||||||= targets:35   GACCGUCCGCCCCUGUGCAGAGG   57 Target Full Sequence	1.0	TSA: Zea mays contig02698, mRNA sequence	NA	coding protein	psRNATarget
BT088349.1	ncRNA:23   UUGGCAGGCGGGGACACGUCUCU   1   =|||||||||||||||||||||= targets:1347   GACCGUCCGCCCCUGUGCAGAGG   1369 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
BT088349.1	ncRNA:23   UUGGCAGGCGGGGACACGUCUCU   1   =||*|||||||||||*||||||| targets:1275   GACAGUCCGCCCCUGCGCAGAGA   1297 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:23   UUGGCAGGCGGGGACACGUCUCU   1   =|||||||||||||||||||||= targets:1347   GACCGUCCGCCCCUGUGCAGAGG   1369 Target Full Sequence	1.0	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:23   UUGGCAGGCGGGGACACGUCUCU   1   =||*|||||||||||*||||||| targets:1275   GACAGUCCGCCCCUGCGCAGAGA   1297 Target Full Sequence	1.5	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
HI403079.1	ncRNA:23   UUGGCAGGCGGGGACACGUCUCU   1   =|||||||||*|||||||||||| targets:47   GACCGUCCGCGCCUGUGCAGAGA   69 Target Full Sequence	1.5	Sequence 1204 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235209.1	ncRNA:23   UUGGCAGGCGGGGACACGUCUCU   1   =|||||||||*|||||||||||| targets:47   GACCGUCCGCGCCUGUGCAGAGA   69 Target Full Sequence	1.5	Sequence 1204 from Patent EP2985353	NA	coding protein	psRNATarget
JB163540.1	ncRNA:23   UUGGCAGGCGGGGACACGUCUCU   1   =|||||||||*|||||||||||| targets:47   GACCGUCCGCGCCUGUGCAGAGA   69 Target Full Sequence	1.5	Sequence 1204 from Patent EP2559767	NA	coding protein	psRNATarget
EU948904.1	ncRNA:23   UUGGCAGGCGGGGACACGUCUCU   1   =||||||||||||||||*||||| targets:527   GACCGUCCGCCCCUGUGAAGAGA   549 Target Full Sequence	1.5	Zea mays clone 389441 mRNA sequence	NA	coding protein	psRNATarget
EU949034.1	ncRNA:23   UUGGCAGGCGGGGACACGUCUCU   1   =||||||||||||||||*||||| targets:528   GACCGUCCGCCCCUGUGAAGAGA   550 Target Full Sequence	1.5	Zea mays clone 394358 mRNA sequence	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:23   UUGGCAGGCGGGGACACGUCUCU   1   =|||||||||||||||*|||||= targets:2790   GACCGUCCGCCCCUGUUCAGAGG   2812 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:23   UUGGCAGGCGGGGACACGUCUCU   1   =||*|||||||||||*||||||| targets:2718   GACAGUCCGCCCCUGCGCAGAGA   2740 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget