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BaseInfo

ncRNA ID novel_zma_miR3893
Species Zea mays
Class miRNA
Genome position Chr1:296929312-296929373 [+]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 39 - CGCUAGUGGAAAUCGAUUUCCAUU - 62
Stem-loop(if miRNA) --  A                A     UUCU
  UG AAAUCGAUUUCCAUUG CGGUU    U
  || |||||||||||||||| |||||
  AC UUUAGCUAAAGGUGAU GCUAA    A
UU  C                C     CUCG
Stem-loop sequence UGAAAAUCGAUUUCCAUUGACGGUUUUCUUAGCUCAAUCGCUAGUGGAAAUCGAUUUCCAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU960305.1
ncRNA:24   UUACCUUUAGCUAAAGGUGAUCGC   1
  |=||*||||||||||=||||||||
targets:671   AGUGAAAAUCGAUUUUCACUAGCG   694

1.5 Zea mays clone 223391 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001150001.1
ncRNA:24   UUACCUUUAGCUAAAGGUGAUCGC   1
  |=||*||||||||||=||||||||
targets:671   AGUGAAAAUCGAUUUUCACUAGCG   694

1.5 Zea mays uncharacterized LOC100276144 (LOC100276144), mRNA NA coding protein psRNATarget