| ncRNA ID | osa-miR444c.1 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | NA |
| Reference genome | NA |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | NA - UGUUGUCUCAAGCUUGCUGCC - NA |
| Stem-loop(if miRNA) |
AGUUG - U A U --- UUUA CUG CAAG GGAGGCGGCAAGCU GAGACAGCAACUGCAUA CUUGCAAGAAA AUCGGU U ||| |||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||| G GAC GUUU CCUCCGUCGUUCGA CUCUGUUGUUGACGUGU GAACGUUCUUU UAGCCA G ---AA C C A C UAG UACC |
| Stem-loop sequence | AGUUGCUGCAAGUGGAGGCGGCAAGCUAGAGACAGCAACUGCAUAUCUUGCAAGAAAAUCGGUUUUAUGGCCAUACCGAUGAUUUUCUUGCAAGCUGUGCAGUUGUUGUCUCAAGCUUGCUGCCUCCCUUUGCCAGAA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AY177696.1 |
|
0.0 | Oryza sativa (japonica cultivar-group) transcription factor MADS27 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| CT835409.1 |
|
0.0 | Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA125M19, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015780820.1 |
|
0.0 | PREDICTED: Oryza sativa Japonica Group MADS-box transcription factor 27-like (LOC4336057), mRNA | MADS-box transcription factor 27-like(LOC4336057) | coding protein | psRNATarget | |||||||||
| XM_015771209.1 |
|
0.0 | PREDICTED: Oryza sativa Japonica Group MADS-box transcription factor 27 (LOC4329771), mRNA | MADS-box transcription factor 27(LOC4329771) | coding protein | psRNATarget | |||||||||
| AK243669.1 |
|
0.0 | Oryza sativa Japonica Group cDNA, clone: J100089N11, full insert sequence | NA | coding protein | psRNATarget |
| 1 | PMID:18353984
"Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)"; Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ; Proc Natl Acad Sci U S A. 105:4951-4956(2008). |
| 2 | PMID:18312648
"Identification of novel and candidate miRNAs in rice by high throughput sequencing"; Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK; BMC Plant Biol. 8:25(2008). |