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BaseInfo

ncRNA ID	novel_zma_miR3889
Species	Zea mays
Class	miRNA
Genome position	Chr7:157324069-157324133 [+]
Reference genome	RefGen_v4
Source	SRR2287159;SRR2287160;SRR2287165;SRR5451003;SRR2089699
Length	24
Mature sequence(if miRNA)	42 - GUAACUAGAACGGAGUGGCUCCAA - 65
Stem-loop(if miRNA)	--             C C    UUG    UGU   GGAGCCGUUCUGU C AGUU   UUGU   U   ||||||||||||| | ||||   ||||   U   CCUCGGUGAGGCA G UCAA   AACA   G AA             A A    UGA    UUG
Stem-loop sequence	GGAGCCGUUCUGUCCCAGUUUUGUUGUUGUUUGGUUACAAAGUAACUAGAACGGAGUGGCUCCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB170147.1	ncRNA:24   AACCUCGGUGAGGCAAGAUCAAUG   1   |||||||||||||||||||||||| targets:105   UUGGAGCCACUCCGUUCUAGUUAC   128 Target Full Sequence	0.0	Sequence 7811 from Patent EP2559767	NA	coding protein	psRNATarget
HI409686.1	ncRNA:24   AACCUCGGUGAGGCAAGAUCAAUG   1   |||||||||||||||||||||||| targets:105   UUGGAGCCACUCCGUUCUAGUUAC   128 Target Full Sequence	0.0	Sequence 7811 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241816.1	ncRNA:24   AACCUCGGUGAGGCAAGAUCAAUG   1   |||||||||||||||||||||||| targets:105   UUGGAGCCACUCCGUUCUAGUUAC   128 Target Full Sequence	0.0	Sequence 7811 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020542825.1	ncRNA:24   AACCUCGGUGAGGCAAGAUCAAUG   1   |||*||=||||=|||||||||||| targets:702   UUGAAGUCACUUCGUUCUAGUUAC   725 Target Full Sequence	2.5	PREDICTED: Zea mays UPF0051 protein ABCI8, chloroplastic-like (LOC109941650), mRNA	NA	coding protein	psRNATarget
HI408626.1	ncRNA:24   AACCUCGGUGAGGCAAGAUCAAUG   1   |||||||*||||||||||||||*| targets:137   UUGGAGCGACUCCGUUCUAGUUUC   160 Target Full Sequence	2.5	Sequence 6751 from Patent EP2074227	NA	coding protein	psRNATarget
JB169087.1	ncRNA:24   AACCUCGGUGAGGCAAGAUCAAUG   1   |||||||*||||||||||||||*| targets:137   UUGGAGCGACUCCGUUCUAGUUUC   160 Target Full Sequence	2.5	Sequence 6751 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240756.1	ncRNA:24   AACCUCGGUGAGGCAAGAUCAAUG   1   |||||||*||||||||||||||*| targets:137   UUGGAGCGACUCCGUUCUAGUUUC   160 Target Full Sequence	2.5	Sequence 6751 from Patent EP2985353	NA	coding protein	psRNATarget
BT084215.2	ncRNA:24   AACCUCGGUGAGGCAAGAUCAAUG   1   *|*|||||=||||||||||||||* targets:1135   AUAGAGCCGCUCCGUUCUAGUUAA   1158 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0090B20 mRNA, complete cds	NA	coding protein	psRNATarget