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BaseInfo

ncRNA ID novel_zma_miR3887
Species Zea mays
Class miRNA
Genome position Chr7:150079372-150079455 [+]
Reference genome RefGen_v4
Source SRR2287159;SRR2287162
Length 24
Mature sequence(if miRNA) 1 - AUGGAUUGAGUGAGAUUAGAUGAG - 24
Stem-loop(if miRNA) --        AG  A    A  UG    UAAAUCCUAACUAA
  AUGGAUUG  UG GAUU GA  AGUU              G
  ||||||||  || |||| ||  ||||
  UACCUAAC  AC CUAA CU  UUUA              U
GG        CU  C    C  UU    AUUUUUUCACAAAU
Stem-loop sequence AUGGAUUGAGUGAGAUUAGAUGAGUUUAAAUCCUAACUAAGUUAAACACUUUUUUAAUUUUUUCCAAUCCCAUCCAAUCCAUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008674375.2
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  |||||||||||||||||||||||*
targets:3436   CUCAUCUAAUCUCACUCAAUCCAC   3459

1.0 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674376.2
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  |||||||||||||||||||||||*
targets:3405   CUCAUCUAAUCUCACUCAAUCCAC   3428

1.0 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674377.2
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  |||||||||||||||||||||||*
targets:3392   CUCAUCUAAUCUCACUCAAUCCAC   3415

1.0 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008672266.2
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  =|||||||||||||=|||||||||
targets:1194   UUCAUCUAAUCUCAUUCAAUCCAU   1217

1.5 PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008672265.2
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  =|||||||||||||=|||||||||
targets:942   UUCAUCUAAUCUCAUUCAAUCCAU   965

1.5 PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X1, mRNA NA coding protein psRNATarget
AY112141.1
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  |||||||||||||||||||||=|*
targets:226   CUCAUCUAAUCUCACUCAAUCUAC   249

2.5 Zea mays CL24213_1 mRNA sequence NA coding protein psRNATarget
BT062183.2
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  ||||||*||||||||||||||||*
targets:244   CUCAUCCAAUCUCACUCAAUCCAC   267

2.0 Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds NA coding protein psRNATarget
HI405877.1
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  ||||||*||||||||||||||||*
targets:85   CUCAUCCAAUCUCACUCAAUCCAC   108

2.0 Sequence 4002 from Patent EP2074227 NA coding protein psRNATarget
JB166338.1
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  ||||||*||||||||||||||||*
targets:85   CUCAUCCAAUCUCACUCAAUCCAC   108

2.0 Sequence 4002 from Patent EP2559767 NA coding protein psRNATarget
LQ238007.1
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  ||||||*||||||||||||||||*
targets:85   CUCAUCCAAUCUCACUCAAUCCAC   108

2.0 Sequence 4002 from Patent EP2985353 NA coding protein psRNATarget
EZ092645.1
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  ||||||*||||||||||||||||*
targets:14   CUCAUCCAAUCUCACUCAAUCCAC   37

2.0 TSA: Zea mays contig28294, mRNA sequence NA coding protein psRNATarget
XM_008669549.1
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  |*|||||||||*||||||||||||
targets:2080   CACAUCUAAUCCCACUCAAUCCAU   2103

1.5 PREDICTED: Zea mays hypothetical protein (LOC100279312), transcript variant X1, mRNA NA coding protein psRNATarget
BT042044.2
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  |*|||||||||*||||||||||||
targets:1363   CACAUCUAAUCCCACUCAAUCCAU   1386

1.5 Zea mays full-length cDNA clone ZM_BFb0117M08 mRNA, complete cds NA coding protein psRNATarget
XM_020549703.1
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  |*||||*||||||||||||||||*
targets:2346   CCCAUCCAAUCUCACUCAAUCCAC   2369

2.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549704.1
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  |*||||*||||||||||||||||*
targets:2286   CCCAUCCAAUCUCACUCAAUCCAC   2309

2.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674604.2
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  |*||||*||||||||||||||||*
targets:2279   CCCAUCCAAUCUCACUCAAUCCAC   2302

2.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA NA coding protein psRNATarget
EU956718.1
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  |*||||*||||||||||||||||*
targets:2151   CCCAUCCAAUCUCACUCAAUCCAC   2174

2.0 Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds NA coding protein psRNATarget
NM_001154362.2
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  |*||||*||||||||||||||||*
targets:2150   CCCAUCCAAUCUCACUCAAUCCAC   2173

2.0 Zea mays protein kinase domain containing protein (LOC100281444), mRNA NA coding protein psRNATarget
BT063416.1
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  |*||||*||||||||||||||||*
targets:2078   CCCAUCCAAUCUCACUCAAUCCAC   2101

2.0 Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds NA coding protein psRNATarget
BT086633.1
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  |*||||*||||||||||||||||*
targets:453   CCCAUCCAAUCUCACUCAAUCCAC   476

2.0 Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds NA coding protein psRNATarget
JB166354.1
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  |*||||*||||||||||||||||*
targets:77   CCCAUCCAAUCUCACUCAAUCCAC   100

2.0 Sequence 4018 from Patent EP2559767 NA coding protein psRNATarget
LQ238023.1
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  |*||||*||||||||||||||||*
targets:77   CCCAUCCAAUCUCACUCAAUCCAC   100

2.0 Sequence 4018 from Patent EP2985353 NA coding protein psRNATarget
HI405893.1
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  |*||||*||||||||||||||||*
targets:77   CCCAUCCAAUCUCACUCAAUCCAC   100

2.0 Sequence 4018 from Patent EP2074227 NA coding protein psRNATarget
NM_001174368.1
ncRNA:24   GAGUAGA-UUAGAGUGAGUUAGGUA   1
  ||||-||-||||||||||||||||*
targets:1441   CUCA-CUCAAUCUCACUCAAUCCAC   1464

3.0 Zea mays hypothetical protein (LOC100381539), mRNA NA coding protein psRNATarget
BT061560.1
ncRNA:24   GAGUAGA-UUAGAGUGAGUUAGGUA   1
  ||||-||-||||||||||||||||*
targets:1441   CUCA-CUCAAUCUCACUCAAUCCAC   1464

3.0 Zea mays full-length cDNA clone ZM_BFb0158C09 mRNA, complete cds NA coding protein psRNATarget
JB166339.1
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  |*=|||*||||||||||||||||*
targets:89   CAUAUCCAAUCUCACUCAAUCCAC   112

2.0 Sequence 4003 from Patent EP2559767 NA coding protein psRNATarget
HI405878.1
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  |*=|||*||||||||||||||||*
targets:89   CAUAUCCAAUCUCACUCAAUCCAC   112

2.0 Sequence 4003 from Patent EP2074227 NA coding protein psRNATarget
LQ238008.1
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  |*=|||*||||||||||||||||*
targets:89   CAUAUCCAAUCUCACUCAAUCCAC   112

2.0 Sequence 4003 from Patent EP2985353 NA coding protein psRNATarget
BT043378.1
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  |*||||*||||*||||||||||||
targets:1464   CCCAUCCAAUCCCACUCAAUCCAU   1487

2.5 Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds NA coding protein psRNATarget
NM_001148918.1
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  |*||||*||||*||||||||||||
targets:1464   CCCAUCCAAUCCCACUCAAUCCAU   1487

2.5 Zea mays nodulation homolog 1 (znod1), mRNA NA coding protein psRNATarget
HI403005.1
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  |*||||*||||*||||||||||||
targets:96   CCCAUCCAAUCCCACUCAAUCCAU   119

2.5 Sequence 1130 from Patent EP2074227 NA coding protein psRNATarget
JB163466.1
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  |*||||*||||*||||||||||||
targets:96   CCCAUCCAAUCCCACUCAAUCCAU   119

2.5 Sequence 1130 from Patent EP2559767 NA coding protein psRNATarget
LQ235135.1
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  |*||||*||||*||||||||||||
targets:96   CCCAUCCAAUCCCACUCAAUCCAU   119

2.5 Sequence 1130 from Patent EP2985353 NA coding protein psRNATarget
JB169468.1
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  ||||*|*||||*||||||||||||
targets:71   CUCACCCAAUCCCACUCAAUCCAU   94

2.5 Sequence 7132 from Patent EP2559767 NA coding protein psRNATarget
LQ241137.1
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  ||||*|*||||*||||||||||||
targets:71   CUCACCCAAUCCCACUCAAUCCAU   94

2.5 Sequence 7132 from Patent EP2985353 NA coding protein psRNATarget
HI409007.1
ncRNA:24   GAGUAGAUUAGAGUGAGUUAGGUA   1
  ||||*|*||||*||||||||||||
targets:71   CUCACCCAAUCCCACUCAAUCCAU   94

2.5 Sequence 7132 from Patent EP2074227 NA coding protein psRNATarget
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