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BaseInfo

ncRNA ID	novel_zma_miR3881
Species	Zea mays
Class	miRNA
Genome position	Chr7:8610714-8610767 [+]
Reference genome	RefGen_v4
Source	SRR2287159;SRR1997866
Length	24
Mature sequence(if miRNA)	1 - GCGUAGGGGGCGCUGUAGGGGCAC - 24
Stem-loop(if miRNA)	--GC            G  G  G A       GUAGGGGGCGCU UA GG C CCG     |||||||||||| || || | ||C     CAUCCCCCGUGA AU CC G GGU CGUA            G  G  G -
Stem-loop sequence	GCGUAGGGGGCGCUGUAGGGGCACCGCUGGGGCCGUAGAGUGCCCCCUACAUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ106353.1	ncRNA:24   CACGGGGAUGUCGCGGGGGAUGCG   1   |*||=|||||||||||=||||||| targets:17   GCGCUCCUACAGCGCCUCCUACGC   40 Target Full Sequence	1.5	TSA: Zea mays contig42011, mRNA sequence	NA	coding protein	psRNATarget
NM_001159432.1	ncRNA:24   CACGGGGAUGUCGCGGGGGAUGCG   1   |*||=|||||||||||=||||||| targets:266   GCGCUCCUACAGCGCCUCCUACGC   289 Target Full Sequence	1.5	Zea mays uncharacterized LOC100273352 (LOC100273352), transcript variant 2, mRNA	NA	coding protein	psRNATarget
BT040895.1	ncRNA:24   CACGGGGAUGUCGCGGGGGAUGCG   1   |*||=|||||||||||=||||||| targets:266   GCGCUCCUACAGCGCCUCCUACGC   289 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0147M01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149524.1	ncRNA:24   CACGGGGAUGUCGCGGGGGAUGCG   1   |*||=|||||||||||=||||||| targets:305   GCGCUCCUACAGCGCCUCCUACGC   328 Target Full Sequence	1.5	Zea mays uncharacterized LOC100273352 (LOC100273352), transcript variant 1, mRNA	NA	coding protein	psRNATarget
EU956052.1	ncRNA:24   CACGGGGAUGUCGCGGGGGAUGCG   1   |*||=|||||||||||=||||||| targets:305   GCGCUCCUACAGCGCCUCCUACGC   328 Target Full Sequence	1.5	Zea mays clone 1556290 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149465.1	ncRNA:24   CACGGGGAUGUCGCGGGGGAUGCG   1   |*||=|||||||||||=||||||| targets:305   GCGCUCCUACAGCGCCUCCUACGC   328 Target Full Sequence	1.5	Zea mays uncharacterized LOC100273352 (LOC100273352), transcript variant 3, mRNA	NA	coding protein	psRNATarget
EU955560.1	ncRNA:24   CACGGGGAUGUCGCGGGGGAUGCG   1   |*||=|||||||||||=||||||| targets:305   GCGCUCCUACAGCGCCUCCUACGC   328 Target Full Sequence	1.5	Zea mays clone 1537002 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008681125.2	ncRNA:24   CACGGGGAUGUCGCGGGGGAUGCG   1   ***||||||||||||||||||||= targets:1877   CGCCCCCUACAGCGCCCCCUACGU   1900 Target Full Sequence	1.0	PREDICTED: Zea mays cytochrome P450 714C3-like (LOC103654294), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008647417.2	ncRNA:24   CACGGGGAUGUCGCGGGGGAUGCG   1   |*||=|*|||||||||=||||||| targets:348   GCGCUCGUACAGCGCCUCCUACGC   371 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103627094), mRNA	NA	coding protein	psRNATarget