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BaseInfo

ncRNA ID novel_zma_miR3879
Species Zea mays
Class miRNA
Genome position Chr7:39887942-39888043 [+]
Reference genome RefGen_v4
Source SRR2287159;SRR2287165;SRR4237222;SRR5099742;SRR5100255
Length 21
Mature sequence(if miRNA) 1 - GGCGGACUGGGAACACAUGGG - 21
Stem-loop(if miRNA) --    GA             GGAAUGAGA        U   U  G   U  U   C
  GGCG  CUGGGAACACAUG         UGAGAUCA UGC CG UCG GC GGC U
  ||||  |||||||||||||         |||||||| ||| || ||| || |||
  CCGC  GACUCUUGUGUAC         GUUCUAGU GCG GC GGC UG CCG G
CC    UG             ---------        U   C  -   -  -   G
Stem-loop sequence GGCGGACUGGGAACACAUGGGAAUGAGAUGAGAUCAUUGCUCGGUCGUGCUGGCCUGGGCCGUCGGCGCGCGUUGAUCUUGCAUGUGUUCUCAGGUCGCCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI405838.1
ncRNA:21   GGGUACACAAGGGUCAGGCGG   1
  |||||||||||||||||||||
targets:91   CCCAUGUGUUCCCAGUCCGCC   111

0.0 Sequence 3963 from Patent EP2074227 NA coding protein psRNATarget
LQ237968.1
ncRNA:21   GGGUACACAAGGGUCAGGCGG   1
  |||||||||||||||||||||
targets:91   CCCAUGUGUUCCCAGUCCGCC   111

0.0 Sequence 3963 from Patent EP2985353 NA coding protein psRNATarget
JB166299.1
ncRNA:21   GGGUACACAAGGGUCAGGCGG   1
  |||||||||||||||||||||
targets:91   CCCAUGUGUUCCCAGUCCGCC   111

0.0 Sequence 3963 from Patent EP2559767 NA coding protein psRNATarget
HI403375.1
ncRNA:21   GGGUACACAAGGGUCAGGCGG   1
  |||||||||||||||||||||
targets:92   CCCAUGUGUUCCCAGUCCGCC   112

0.0 Sequence 1500 from Patent EP2074227 NA coding protein psRNATarget
JB163535.1
ncRNA:21   GGGUACACAAGGGUCAGGCGG   1
  |||||||||||||||||||||
targets:92   CCCAUGUGUUCCCAGUCCGCC   112

0.0 Sequence 1199 from Patent EP2559767 NA coding protein psRNATarget
LQ235505.1
ncRNA:21   GGGUACACAAGGGUCAGGCGG   1
  |||||||||||||||||||||
targets:92   CCCAUGUGUUCCCAGUCCGCC   112

0.0 Sequence 1500 from Patent EP2985353 NA coding protein psRNATarget
JB163836.1
ncRNA:21   GGGUACACAAGGGUCAGGCGG   1
  |||||||||||||||||||||
targets:92   CCCAUGUGUUCCCAGUCCGCC   112

0.0 Sequence 1500 from Patent EP2559767 NA coding protein psRNATarget
HI403074.1
ncRNA:21   GGGUACACAAGGGUCAGGCGG   1
  |||||||||||||||||||||
targets:92   CCCAUGUGUUCCCAGUCCGCC   112

0.0 Sequence 1199 from Patent EP2074227 NA coding protein psRNATarget
LQ235204.1
ncRNA:21   GGGUACACAAGGGUCAGGCGG   1
  |||||||||||||||||||||
targets:92   CCCAUGUGUUCCCAGUCCGCC   112

0.0 Sequence 1199 from Patent EP2985353 NA coding protein psRNATarget
LQ242312.1
ncRNA:21   GGGUACACAAGGGUCAGGCGG   1
  |||||||||||||||||||||
targets:94   CCCAUGUGUUCCCAGUCCGCC   114

0.0 Sequence 8307 from Patent EP2985353 NA coding protein psRNATarget
HI410182.1
ncRNA:21   GGGUACACAAGGGUCAGGCGG   1
  |||||||||||||||||||||
targets:94   CCCAUGUGUUCCCAGUCCGCC   114

0.0 Sequence 8307 from Patent EP2074227 NA coding protein psRNATarget
JB170643.1
ncRNA:21   GGGUACACAAGGGUCAGGCGG   1
  |||||||||||||||||||||
targets:94   CCCAUGUGUUCCCAGUCCGCC   114

0.0 Sequence 8307 from Patent EP2559767 NA coding protein psRNATarget
EZ071252.1
ncRNA:21   GGGUACACAAGGGUCAGGCGG   1
  *|=||||*||||||||||||*
targets:245   GCUAUGUUUUCCCAGUCCGCG   265

3.0 TSA: Zea mays contig06889, mRNA sequence NA coding protein psRNATarget
EU961173.1
ncRNA:21   GGGUACACAAGGGUCAGGCGG   1
  *|=||||*||||||||||||*
targets:884   GCUAUGUUUUCCCAGUCCGCG   904

3.0 Zea mays clone 233087 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001143651.1
ncRNA:21   GGGUACACAAGGGUCAGGCGG   1
  *|=||||*||||||||||||*
targets:1219   GCUAUGUUUUCCCAGUCCGCG   1239

3.0 Zea mays Stomatal closure-related actin-binding protein 1 (si486041f06), mRNA NA coding protein psRNATarget
BT038307.1
ncRNA:21   GGGUACACAAGGGUCAGGCGG   1
  *|=||||*||||||||||||*
targets:1219   GCUAUGUUUUCCCAGUCCGCG   1239

3.0 Zea mays full-length cDNA clone ZM_BFb0224P06 mRNA, complete cds NA coding protein psRNATarget
XM_008659988.2
ncRNA:21   GGGUACACAAGGGUCAGGCGG   1
  *|=||||*||||||||||||*
targets:2066   GCUAUGUUUUCCCAGUCCGCG   2086

3.0 PREDICTED: Zea mays Stomatal closure-related actin-binding protein 1 (si486041f06), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008659986.2
ncRNA:21   GGGUACACAAGGGUCAGGCGG   1
  *|=||||*||||||||||||*
targets:2110   GCUAUGUUUUCCCAGUCCGCG   2130

3.0 PREDICTED: Zea mays Stomatal closure-related actin-binding protein 1 (si486041f06), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546264.1
ncRNA:21   GGGUACACAAGGGUCAGGCGG   1
  *||||||*||||||*||||||
targets:8918   ACCAUGUCUUCCCAUUCCGCC   8938

2.5 PREDICTED: Zea mays NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic (LOC109943316), partial mRNA NA coding protein psRNATarget
BT033904.1
ncRNA:21   GGGUACACAAGGGUCAGGCGG   1
  **|||||*|||||||*|||||
targets:492   GGCAUGUCUUCCCAGGCCGCC   512

2.5 Zea mays full-length cDNA clone ZM_BFc0061I11 mRNA, complete cds NA coding protein psRNATarget
BT042961.1
ncRNA:21   GGGUACACAAGGGUCAGGCGG   1
  **|||||*|||||||*|||||
targets:509   GGCAUGUCUUCCCAGGCCGCC   529

2.5 Zea mays full-length cDNA clone ZM_BFc0070L11 mRNA, complete cds NA coding protein psRNATarget
NM_001148768.1
ncRNA:21   GGGUACACAAGGGUCAGGCGG   1
  **|||||*|||||||*|||||
targets:509   GGCAUGUCUUCCCAGGCCGCC   529

2.5 Zea mays hypothetical protein (LOC100274409), mRNA NA coding protein psRNATarget
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