Search result

BaseInfo

ncRNA ID novel_zma_miR3877
Species Zea mays
Class miRNA
Genome position Chr1:167119662-167119757 [+]
Reference genome RefGen_v4
Source SRR2287159;SRR5100255
Length 24
Mature sequence(if miRNA) 73 - AGAAGCGCACAGAUGAAGUCGGGG - 96
Stem-loop(if miRNA) --      G   G                    G  G GG       U
  CCGGCU CAU UGUGUGCUUCUCUUCUCUUA GU G  UGCUAAG G
  |||||| ||| |||||||||||||||||||| || |  |||||||
  GGCUGA GUA ACACGCGAAGAGAAGAGAAU CA U  AUGAUUC A
GG      A   G                    A  G AG       U
Stem-loop sequence CCGGCUGCAUGUGUGUGCUUCUCUUCUCUUAGGUGGGGUGCUAAGUGAUCUUAGUAGAUGACAUAAGAGAAGAGAAGCGCACAGAUGAAGUCGGGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020538582.1
ncRNA:24   GGGGCUGAAGUAGACACGCGAAGA   1
  |||||=|||=||||||||||||||
targets:3265   CCCCGGCUUUAUCUGUGCGCUUCU   3288

2.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020538581.1
ncRNA:24   GGGGCUGAAGUAGACACGCGAAGA   1
  |||||=|||=||||||||||||||
targets:3403   CCCCGGCUUUAUCUGUGCGCUUCU   3426

2.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X1, mRNA NA coding protein psRNATarget