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BaseInfo

ncRNA ID	novel_zma_miR3875
Species	Zea mays
Class	miRNA
Genome position	Chr7:81417329-81417404 [-]
Reference genome	RefGen_v4
Source	SRR2287159
Length	21
Mature sequence(if miRNA)	56 - UGGAUAGGCCCCACCUGCAGG - 76
Stem-loop(if miRNA)	--U     G              -----  A     ACAA    GGAUA GCCCCACCUGCAGG     CA AUAAC    C    ||||| ||||||||||||||     || |||||    U    CCUAU UGGGGUGGACGUUC     GU UAUUG    A CCU     A              AGGUG  C     CAAA
Stem-loop sequence	UGGAUAGGCCCCACCUGCAGGCAAAUAACACAACUAAAACGUUAUCUGGUGGACUUGCAGGUGGGGUAUAUCCUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ073016.1	ncRNA:21   GGACGUCCACCCCGGAUAGGU   1   ||||||||||||||||||||| targets:19   CCUGCAGGUGGGGCCUAUCCA   39 Target Full Sequence	0.0	TSA: Zea mays contig08653, mRNA sequence	NA	coding protein	psRNATarget
HI406008.1	ncRNA:21   GGACGUCCACCCCGGAUAGGU   1   |||||||||||||=||||||* targets:64   CCUGCAGGUGGGGUCUAUCCU   84 Target Full Sequence	2.5	Sequence 4133 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238138.1	ncRNA:21   GGACGUCCACCCCGGAUAGGU   1   |||||||||||||=||||||* targets:64   CCUGCAGGUGGGGUCUAUCCU   84 Target Full Sequence	2.5	Sequence 4133 from Patent EP2985353	NA	coding protein	psRNATarget
JB166469.1	ncRNA:21   GGACGUCCACCCCGGAUAGGU   1   |||||||||||||=||||||* targets:64   CCUGCAGGUGGGGUCUAUCCU   84 Target Full Sequence	2.5	Sequence 4133 from Patent EP2559767	NA	coding protein	psRNATarget
HI403343.1	ncRNA:21   GGACGUCCACCCCGGAUAGGU   1   |||*||||||||||||||||* targets:89   CCUACAGGUGGGGCCUAUCCU   109 Target Full Sequence	2.0	Sequence 1468 from Patent EP2074227	NA	coding protein	psRNATarget
HI403343.1	ncRNA:21   GGACGUCCACCCCGGAUAGGU   1   |||*||||||||||||||||* targets:143   CCUACAGGUGGGGCCUAUCCU   163 Target Full Sequence	2.0	Sequence 1468 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235473.1	ncRNA:21   GGACGUCCACCCCGGAUAGGU   1   |||*||||||||||||||||* targets:89   CCUACAGGUGGGGCCUAUCCU   109 Target Full Sequence	2.0	Sequence 1468 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235473.1	ncRNA:21   GGACGUCCACCCCGGAUAGGU   1   |||*||||||||||||||||* targets:143   CCUACAGGUGGGGCCUAUCCU   163 Target Full Sequence	2.0	Sequence 1468 from Patent EP2985353	NA	coding protein	psRNATarget
JB163804.1	ncRNA:21   GGACGUCCACCCCGGAUAGGU   1   |||*||||||||||||||||* targets:89   CCUACAGGUGGGGCCUAUCCU   109 Target Full Sequence	2.0	Sequence 1468 from Patent EP2559767	NA	coding protein	psRNATarget
JB163804.1	ncRNA:21   GGACGUCCACCCCGGAUAGGU   1   |||*||||||||||||||||* targets:143   CCUACAGGUGGGGCCUAUCCU   163 Target Full Sequence	2.0	Sequence 1468 from Patent EP2559767	NA	coding protein	psRNATarget
EZ055203.1	ncRNA:21   GGACGUCCACCCCGGAUAGGU   1   *||||*|*||||||||||||| targets:119   ACUGCUGCUGGGGCCUAUCCA   139 Target Full Sequence	2.0	TSA: Zea mays contig56325, mRNA sequence	NA	coding protein	psRNATarget
AY623894.1	ncRNA:21   GGACGUCCACCCCGGAUAGGU   1   *||||*|*||||||||||||| targets:1143   ACUGCUGCUGGGGCCUAUCCA   1163 Target Full Sequence	2.0	Zea mays putative pyruvate kinase mRNA, complete cds	NA	coding protein	psRNATarget