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BaseInfo

ncRNA ID	osa-miR444b.1
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	miRBase
Length	21
Mature sequence(if miRNA)	NA - UGUUGUCUCAAGCUUGCUGCC - NA
Stem-loop(if miRNA)	-AU         U   GA        U               U              ---UUUAG    U    GCAAGGGGA GGU  CAAGCUUG GGCAGCAACUGCACA CUUGCAAGAAAAUC        GGUU U    ||||||||| |||  |||||||| ||||||||||||||| ||||||||||||||        |||| U    CGUUUCCCU CCG  GUUCGAAC CUGUUGUUGACGUGU GAACGUUCUUUUAG        CCAG C AAC         -   UC        U               U              UAGCCAUA    A
Stem-loop sequence	AUGCAAGGGGAUGGUGACAAGCUUGUGGCAGCAACUGCACAUCUUGCAAGAAAAUCUUUAGGGUUUUUCAGACCAUACCGAUGAUUUUCUUGCAAGUUGUGCAGUUGUUGUCUCAAGCUUGCUGCCUCCCUUUGCCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY177696.1	ncRNA:21   CCGUCGUUCGAACUCUGUUGU   1   ||||||||||||||||||||| targets:276   GGCAGCAAGCUUGAGACAACA   296 Target Full Sequence	0.0	Oryza sativa (japonica cultivar-group) transcription factor MADS27 mRNA, complete cds	NA	coding protein	psRNATarget
CT835409.1	ncRNA:21   CCGUCGUUCGAACUCUGUUGU   1   ||||||||||||||||||||| targets:557   GGCAGCAAGCUUGAGACAACA   577 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA125M19, full insert sequence	NA	coding protein	psRNATarget
XM_015780820.1	ncRNA:21   CCGUCGUUCGAACUCUGUUGU   1   ||||||||||||||||||||| targets:502   GGCAGCAAGCUUGAGACAACA   522 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group MADS-box transcription factor 27-like (LOC4336057), mRNA	MADS-box transcription factor 27-like(LOC4336057)	coding protein	psRNATarget
XM_015771209.1	ncRNA:21   CCGUCGUUCGAACUCUGUUGU   1   ||||||||||||||||||||| targets:630   GGCAGCAAGCUUGAGACAACA   650 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group MADS-box transcription factor 27 (LOC4329771), mRNA	MADS-box transcription factor 27(LOC4329771)	coding protein	psRNATarget
AK243669.1	ncRNA:21   CCGUCGUUCGAACUCUGUUGU   1   ||||||||||||||||||||| targets:1193   GGCAGCAAGCUUGAGACAACA   1213 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J100089N11, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:18353984 "Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)"; Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ; Proc Natl Acad Sci U S A. 105:4951-4956(2008).