Search result

BaseInfo

ncRNA ID	novel_zma_miR3867
Species	Zea mays
Class	miRNA
Genome position	Chr7:176567204-176567257 [-]
Reference genome	RefGen_v4
Source	SRR2287159
Length	24
Mature sequence(if miRNA)	1 - GGUUUAGAGGACGCUGCUGGAGAC - 24
Stem-loop(if miRNA)	--A                 U   UAG    UUUAGCAGCGUUUUCUA AUU   A    ||||||||||||||||| |||    AGGUCGUCGCAGGAGAU UGG   G CAG                 U   CAG
Stem-loop sequence	AUUUAGCAGCGUUUUCUAUAUUUAGAGGACGGUUUAGAGGACGCUGCUGGAGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ107270.1	ncRNA:24   CAGAGGUCGUCGCAGGAGAUUUGG   1   ||||||||||||||||||||||== targets:109   GUCUCCAGCAGCGUCCUCUAAAUU   132 Target Full Sequence	2.5	TSA: Zea mays contig42928, mRNA sequence	NA	coding protein	psRNATarget
BT088287.1	ncRNA:24   CAGAGGUCGUCGCAGGAGAUUUGG   1   ||||||||||||||||||||||== targets:586   GUCUCCAGCAGCGUCCUCUAAAUU   609 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0119E23 mRNA, complete cds	NA	coding protein	psRNATarget
BT067838.1	ncRNA:24   CAGAGGUCGUCGCAGGAGAUUUGG   1   ||||||||||||||||||||||== targets:653   GUCUCCAGCAGCGUCCUCUAAAUU   676 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0167G13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008649073.2	ncRNA:24   CAGAGGUCGUCGCAGGAGAUUUGG   1   ||||||||||||||||||||||== targets:1784   GUCUCCAGCAGCGUCCUCUAAAUU   1807 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100191662 (cl18267_1), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008649072.2	ncRNA:24   CAGAGGUCGUCGCAGGAGAUUUGG   1   ||||||||||||||||||||||== targets:1883   GUCUCCAGCAGCGUCCUCUAAAUU   1906 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100191662 (cl18267_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ238002.1	ncRNA:24   CAGAGGUCGUCGCAGGAGAUUUGG   1   **|||||||||||||||||||||* targets:4   CCCUCCAGCAGCGUCCUCUAAACA   27 Target Full Sequence	1.0	Sequence 3997 from Patent EP2985353	NA	coding protein	psRNATarget
HI405872.1	ncRNA:24   CAGAGGUCGUCGCAGGAGAUUUGG   1   **|||||||||||||||||||||* targets:4   CCCUCCAGCAGCGUCCUCUAAACA   27 Target Full Sequence	1.0	Sequence 3997 from Patent EP2074227	NA	coding protein	psRNATarget
JB166333.1	ncRNA:24   CAGAGGUCGUCGCAGGAGAUUUGG   1   **|||||||||||||||||||||* targets:4   CCCUCCAGCAGCGUCCUCUAAACA   27 Target Full Sequence	1.0	Sequence 3997 from Patent EP2559767	NA	coding protein	psRNATarget
EU975903.1	ncRNA:24   CAGAGGUCGUCGCAGGAGAUUUGG   1   **|||||||||||||||||||||* targets:659   CCCUCCAGCAGCGUCCUCUAAACG   682 Target Full Sequence	1.0	Zea mays clone 504920 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
JB166311.1	ncRNA:24   CAGAGGUCGUCGCAGGAGAUUUGG   1   |**|=|||||||||||||||||== targets:7   GGAUUCAGCAGCGUCCUCUAAAUU   30 Target Full Sequence	2.5	Sequence 3975 from Patent EP2559767	NA	coding protein	psRNATarget
JB166440.1	ncRNA:24   CAGAGGUCGUCGCAGGAGAUUUGG   1   **||||||||*||||||||||||* targets:8   CCCUCCAGCAACGUCCUCUAAACG   31 Target Full Sequence	2.0	Sequence 4104 from Patent EP2559767	NA	coding protein	psRNATarget
HI405850.1	ncRNA:24   CAGAGGUCGUCGCAGGAGAUUUGG   1   |**|=|||||||||||||||||== targets:7   GGAUUCAGCAGCGUCCUCUAAAUU   30 Target Full Sequence	2.5	Sequence 3975 from Patent EP2074227	NA	coding protein	psRNATarget
HI405979.1	ncRNA:24   CAGAGGUCGUCGCAGGAGAUUUGG   1   **||||||||*||||||||||||* targets:8   CCCUCCAGCAACGUCCUCUAAACG   31 Target Full Sequence	2.0	Sequence 4104 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237980.1	ncRNA:24   CAGAGGUCGUCGCAGGAGAUUUGG   1   |**|=|||||||||||||||||== targets:7   GGAUUCAGCAGCGUCCUCUAAAUU   30 Target Full Sequence	2.5	Sequence 3975 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238109.1	ncRNA:24   CAGAGGUCGUCGCAGGAGAUUUGG   1   **||||||||*||||||||||||* targets:8   CCCUCCAGCAACGUCCUCUAAACG   31 Target Full Sequence	2.0	Sequence 4104 from Patent EP2985353	NA	coding protein	psRNATarget
LQ237982.1	ncRNA:24   CAGAGGUCGUCGCAGGAGAUUUGG   1   **||||||||*||||||||||||* targets:9   CCCUCCAGCAACGUCCUCUAAACG   32 Target Full Sequence	2.0	Sequence 3977 from Patent EP2985353	NA	coding protein	psRNATarget
JB166313.1	ncRNA:24   CAGAGGUCGUCGCAGGAGAUUUGG   1   **||||||||*||||||||||||* targets:9   CCCUCCAGCAACGUCCUCUAAACG   32 Target Full Sequence	2.0	Sequence 3977 from Patent EP2559767	NA	coding protein	psRNATarget
HI405852.1	ncRNA:24   CAGAGGUCGUCGCAGGAGAUUUGG   1   **||||||||*||||||||||||* targets:9   CCCUCCAGCAACGUCCUCUAAACG   32 Target Full Sequence	2.0	Sequence 3977 from Patent EP2074227	NA	coding protein	psRNATarget
HI405981.1	ncRNA:24   CAGAGGUCGUCGCAGGAGAUUUGG   1   **||||||||*||||||||||||* targets:8   CCCUCCAGCAACGUCCUCUAAACG   31 Target Full Sequence	2.0	Sequence 4106 from Patent EP2074227	NA	coding protein	psRNATarget
JB166442.1	ncRNA:24   CAGAGGUCGUCGCAGGAGAUUUGG   1   **||||||||*||||||||||||* targets:8   CCCUCCAGCAACGUCCUCUAAACG   31 Target Full Sequence	2.0	Sequence 4106 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238111.1	ncRNA:24   CAGAGGUCGUCGCAGGAGAUUUGG   1   **||||||||*||||||||||||* targets:8   CCCUCCAGCAACGUCCUCUAAACG   31 Target Full Sequence	2.0	Sequence 4106 from Patent EP2985353	NA	coding protein	psRNATarget
EU945316.1	ncRNA:24   CAGAGGUCGUCGCAGGAGAUUUGG   1   **||||||||*||||||||||||* targets:1314   CCCUCCAGCAACGUCCUCUAAACG   1337 Target Full Sequence	2.0	Zea mays clone 257973 mRNA sequence	NA	coding protein	psRNATarget