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BaseInfo

ncRNA ID	novel_zma_miR3865
Species	Zea mays
Class	miRNA
Genome position	Chr6:97560140-97560271 [+]
Reference genome	RefGen_v4
Source	SRR2287159
Length	22
Mature sequence(if miRNA)	1 - AGGGCAUGUUCGGUUACACUAA - 22
Stem-loop(if miRNA)	--     A                                  AU A         C   A     A   AGGGC UGUUCGGUUACACUAAUUUAGGAGGGGAUUGGAG  G UUAAAUCCC UCC AGUCA A   ||||| ||||||||||||||||||||||||||||||||||  | ||||||||| ||| |||||   UCCCG ACAAGCCAAUGUGGUUAGGUUCUCCCCUAACUUC  C AAUUUAGGG AGG UCAGU A AA     A                                  CC A         A   A     A
Stem-loop sequence	AGGGCAUGUUCGGUUACACUAAUUUAGGAGGGGAUUGGAGAUGAUUAAAUCCCCUCCAAGUCAAAAAUGACUAGGAAGGGAUUUAAACCCCUUCAAUCCCCUCUUGGAUUGGUGUAACCGAACAAGCCCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001157439.1	ncRNA:22   AAUCACAUUGGCUUGUACGGGA   1   ||=||||||||||||||||||| targets:551   UUGGUGUAACCGAACAUGCCCU   572 Target Full Sequence	0.0	Zea mays protein transport protein SEC61 gamma subunit (LOC100284544), mRNA	NA	coding protein	psRNATarget
EU968801.1	ncRNA:22   AAUCACAUUGGCUUGUACGGGA   1   ||=||||||||||||||||||| targets:551   UUGGUGUAACCGAACAUGCCCU   572 Target Full Sequence	0.0	Zea mays clone 324211 protein transport protein SEC61 gamma subunit mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542894.1	ncRNA:22   AAUCACAUUGGCUUGUACGGGA   1   ||=||||||||||||||||||| targets:23   UUGGUGUAACCGAACAUGCCCU   44 Target Full Sequence	0.0	PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 (LOC103636763), partial mRNA	NA	coding protein	psRNATarget
BT041883.1	ncRNA:22   AAUCACAUUGGCUUGUACGGGA   1   ||=|||||||||||=||||||* targets:892   UUGGUGUAACCGAAUAUGCCCG   913 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073E14 mRNA, complete cds	NA	coding protein	psRNATarget
BT062257.1	ncRNA:22   AAUCACAUUGGCUUGUACGGGA   1   ||=|||||||||||=||||||* targets:1191   UUGGUGUAACCGAAUAUGCCCG   1212 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0234J14 mRNA, complete cds	NA	coding protein	psRNATarget
EU975659.1	ncRNA:22   AAUCACAUUGGCUUGUACGGGA   1   ||=|||||||||||=||||||* targets:2220   UUGGUGUAACCGAAUAUGCCCG   2241 Target Full Sequence	2.5	Zea mays clone 495563 ankyrin protein kinase-like mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158998.2	ncRNA:22   AAUCACAUUGGCUUGUACGGGA   1   ||=|||||||||||=||||||* targets:2221   UUGGUGUAACCGAAUAUGCCCG   2242 Target Full Sequence	2.5	Zea mays Ankyrin protein kinase-like (LOC100279910), mRNA	NA	coding protein	psRNATarget
NM_001138309.1	ncRNA:22   AAUCACAUUGGCUUGUACGGGA   1   ||=||||||||||||||*|||| targets:1131   UUGGUGUAACCGAACAUACCCU   1152 Target Full Sequence	1.5	Zea mays uncharacterized LOC100193152 (LOC100193152), mRNA	NA	coding protein	psRNATarget
BT035338.1	ncRNA:22   AAUCACAUUGGCUUGUACGGGA   1   ||=||||||||||||||*|||| targets:1131   UUGGUGUAACCGAACAUACCCU   1152 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0056C20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548160.1	ncRNA:22   AAUCACAUUGGCUUGUACGGGA   1   ||=|||||||||||||*||||| targets:4820   UUGGUGUAACCGAACAAGCCCU   4841 Target Full Sequence	1.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670752.2	ncRNA:22   AAUCACAUUGGCUUGUACGGGA   1   ||=|||||||||||||*||||| targets:5047   UUGGUGUAACCGAACAAGCCCU   5068 Target Full Sequence	1.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU949284.1	ncRNA:22   AAUCACAUUGGCUUGUACGGGA   1   ||||*|||||||||||*||||| targets:661   UUAGCGUAACCGAACAAGCCCU   682 Target Full Sequence	2.5	Zea mays clone 400720 mRNA sequence	NA	coding protein	psRNATarget
DQ244893.1	ncRNA:22   AAUCACAUUGGCUUGUACGGGA   1   ||||*|||||||||||*||||| targets:761   UUAGCGUAACCGAACAAGCCCU   782 Target Full Sequence	2.5	Zea mays clone 11585 mRNA sequence	NA	coding protein	psRNATarget
HI408717.1	ncRNA:22   AAUCACAUUGGCUUGUACGGGA   1   ||=||*|||*|||||||||||| targets:38   UUGGUCUAAGCGAACAUGCCCU   59 Target Full Sequence	2.5	Sequence 6842 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240847.1	ncRNA:22   AAUCACAUUGGCUUGUACGGGA   1   ||=||*|||*|||||||||||| targets:38   UUGGUCUAAGCGAACAUGCCCU   59 Target Full Sequence	2.5	Sequence 6842 from Patent EP2985353	NA	coding protein	psRNATarget
JB169178.1	ncRNA:22   AAUCACAUUGGCUUGUACGGGA   1   ||=||*|||*|||||||||||| targets:38   UUGGUCUAAGCGAACAUGCCCU   59 Target Full Sequence	2.5	Sequence 6842 from Patent EP2559767	NA	coding protein	psRNATarget
HI406796.1	ncRNA:22   AAUCACAUUGGCUUGUACGGGA   1   ||=*||||||||||||*||||| targets:119   UUGAUGUAACCGAACAAGCCCU   140 Target Full Sequence	2.5	Sequence 4921 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238926.1	ncRNA:22   AAUCACAUUGGCUUGUACGGGA   1   ||=*||||||||||||*||||| targets:119   UUGAUGUAACCGAACAAGCCCU   140 Target Full Sequence	2.5	Sequence 4921 from Patent EP2985353	NA	coding protein	psRNATarget
JB167257.1	ncRNA:22   AAUCACAUUGGCUUGUACGGGA   1   ||=*||||||||||||*||||| targets:119   UUGAUGUAACCGAACAAGCCCU   140 Target Full Sequence	2.5	Sequence 4921 from Patent EP2559767	NA	coding protein	psRNATarget
EU957179.1	ncRNA:22   AAUCACAUUGGCUUGUACGGGA   1   |*=|||||||||||||*||||| targets:1586   UCGGUGUAACCGAACAAGCCCU   1607 Target Full Sequence	1.5	Zea mays clone 1584995 mRNA sequence	NA	coding protein	psRNATarget
AY110812.1	ncRNA:22   AA-UCACAUUGGCUUGUACGGGA   1   ||-||*|*||||||||||||||| targets:209   UUGAGGGGAACCGAACAUGCCCU   231 Target Full Sequence	2.0	Zea mays CL13054_1 mRNA sequence	NA	coding protein	psRNATarget
BT055781.1	ncRNA:22   AAUCACAUUGGCUUGUACGGGA   1   ****||||||||||||*||||| targets:1636   CCCUUGUAACCGAACAAGCCCU   1657 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0185O06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153140.1	ncRNA:22   AAUCACAUUGGCUUGUACGGGA   1   ****||||||||||||*||||| targets:1636   CCCUUGUAACCGAACAAGCCCU   1657 Target Full Sequence	2.5	Zea mays uncharacterized LOC100280209 (LOC100280209), mRNA	NA	coding protein	psRNATarget
BT061569.1	ncRNA:22   AAUCACAUUGGCUUGUACGGGA   1   ****||||||||||||*||||| targets:1825   CCCUUGUAACCGAACAAGCCCU   1846 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0159M03 mRNA, complete cds	NA	coding protein	psRNATarget