ncRNA ID | novel_zma_miR3861 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr1:278142247-278142380 [+] |
Reference genome | RefGen_v4 |
Source | SRR1583944 |
Length | 24 |
Mature sequence(if miRNA) | 111 - AGCCGACGGGAGUUAUCUAAUUCC - 134 |
Stem-loop(if miRNA) |
--      U            A  G  GG UG G  G     AA   AAA   AG         UG    AAUUAG UAACUCCCGUCG CU GA  C  G CC ACGGG  UUA   UAA  CCCGUCGGC  GC   |||||| |||||||||||| || ||  |  | || |||||  |||   |||  |||||||||  |G   UUAAUC AUUGAGGGCAGC GA UU  G  C GG UGCCC  AAU   AUU  GGGCAGCCG  CG CC      U            C  G  AA GU -  G     GA   AAA   GA         GU  |
Stem-loop sequence | AAUUAGUUAACUCCCGUCGACUGGAGGCUGGGCCGACGGGAAUUAAAAUAAAGCCCGUCGGCUGGCGGCUGGCCGACGGGAGUUAAAAUAAAGCCCGUGGGCUGGAAUUGAGCCGACGGGAGUUAUCUAAUUCC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_008682205.1 |
|
3.0 | PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103655449), mRNA | NA | coding protein | psRNATarget |