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BaseInfo

ncRNA ID novel_zma_miR3861
Species Zea mays
Class miRNA
Genome position Chr1:278142247-278142380 [+]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 111 - AGCCGACGGGAGUUAUCUAAUUCC - 134
Stem-loop(if miRNA) --      U            A  G  GG UG G  G     AA   AAA   AG         UG 
  AAUUAG UAACUCCCGUCG CU GA  C  G CC ACGGG  UUA   UAA  CCCGUCGGC  GC
  |||||| |||||||||||| || ||  |  | || |||||  |||   |||  |||||||||  |G
  UUAAUC AUUGAGGGCAGC GA UU  G  C GG UGCCC  AAU   AUU  GGGCAGCCG  CG
CC      U            C  G  AA GU -  G     GA   AAA   GA         GU 
Stem-loop sequence AAUUAGUUAACUCCCGUCGACUGGAGGCUGGGCCGACGGGAAUUAAAAUAAAGCCCGUCGGCUGGCGGCUGGCCGACGGGAGUUAAAAUAAAGCCCGUGGGCUGGAAUUGAGCCGACGGGAGUUAUCUAAUUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008682205.1
ncRNA:24   CCUUAAUCUAUUGAGGGCAGCCGA   1
  *|=||||*=||||||||||||||*
targets:2   UGGAUUAUGUAACUCCCGUCGGCC   25

3.0 PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103655449), mRNA NA coding protein psRNATarget