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BaseInfo

ncRNA ID novel_zma_miR3860
Species Zea mays
Class miRNA
Genome position Chr6:113948880-113949051 [-]
Reference genome RefGen_v4
Source SRR2287159;SRR2287163;SRR3341856;SRR5099742;SRR5100248;SRR5100255;SRR5105961;SRR5105963
Length 23
Mature sequence(if miRNA) 1 - CAUGCUAACACUGAACAUUUUAG - 23
Stem-loop(if miRNA) --AGGAA       -UC      ----U   -UUCU UG   -      ---------CUC   ---- AUCUACACCAUCAAAUUUCGACUGUGA
       GUUCAGU   AGUAUG     CAU     U  GAU AUCAGG            GAU    G                           C
       |||||||   ||||||     |||     |  ||| ||||||            |||    |
       CAAGUCA   UCGUAC     GUA     A  CUA UAGUCU            GGU    G                           U
GAUUUUA       CAA      UUAUU   UUCCU GU   G      UGUAAGUCAAAA   UUUA AGUCACUUUAUCAAGAGUGUAUUCGUA
Stem-loop sequence AGGAAGUUCAGUUCAGUAUGUCAUUUCUUUGGAUAUCAGGCUCGAUGAUCUACACCAUCAAAUUUCGACUGUGACUAUGCUUAUGUGAGAACUAUUUCACUGAGAUUUUGGAAAACUGAAUGUUCUGAUGAUCUGAUCCUUAUGUUAUUCAUGCUAACACUGAACAUUUUAG