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BaseInfo

ncRNA ID novel_zma_miR3857
Species Zea mays
Class miRNA
Genome position Chr6:171893499-171893588 [-]
Reference genome RefGen_v4
Source SRR2287159
Length 21
Mature sequence(if miRNA) 1 - AUUGGAUUUUGAUUGAAUGGA - 21
Stem-loop(if miRNA) --   C              C     U     U    G  GG  G
  CAU CAAUCAAAAUCCAA GGUGA UGCUA UUUA GU  AA A
  ||| |||||||||||||| ||||| ||||| |||| ||  ||
  GUA GUUAGUUUUAGGUU CCACU GCGAU AAAU UA  UU G
AG   A              A     U     U    G  AA  G
Stem-loop sequence CAUCCAAUCAAAAUCCAACGGUGAUUGCUAUUUUAGGUGGAAGAGGUUAAAUGUAAAUUAGCGUUCACCAUUGGAUUUUGAUUGAAUGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008654991.2
ncRNA:21   AGGUAAGUUAGUUUUAGGUUA   1
  |*|||*||||||||||||||*
targets:2020   UGCAUCCAAUCAAAAUCCAAC   2040

2.0 PREDICTED: Zea mays hypothetical protein (LOC103633284), mRNA NA coding protein psRNATarget
EZ057984.1
ncRNA:21   AGGUAAGUUAGUUUUAGGUUA   1
  *=*|*||||||||||||||||
targets:757   AUAACUCAAUCAAAAUCCAAU   777

2.0 TSA: Zea mays contig59106, mRNA sequence NA coding protein psRNATarget