Search result

BaseInfo

ncRNA ID novel_zma_miR3856
Species Zea mays
Class miRNA
Genome position Chr5:159078270-159078350 [+]
Reference genome RefGen_v4
Source SRR2287159
Length 21
Mature sequence(if miRNA) 1 - CUGGCCGACGGGAAUUACUAA - 21
Stem-loop(if miRNA) --                             C       G
  CUGGCCGACGGGAAUUACUAAUUAAUUCC GUCGGCU A
  ||||||||||||||||||||||||||||| ||||||| C
  GACCGGCUGCCCUUAAUGAUUAAUUAAGG CAGCCGG C
UG                             A       U
Stem-loop sequence CUGGCCGACGGGAAUUACUAAUUAAUUCCCGUCGGCUGACCUGGCCGACAGGAAUUAAUUAGUAAUUCCCGUCGGCCAGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008682205.1
ncRNA:21   AAU-CAUUAAGGGCAGCCGGUC   1
  |||-||||*|||||||||||||
targets:6   UUAUGUAACUCCCGUCGGCCAG   27

3.0 PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103655449), mRNA NA coding protein psRNATarget