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BaseInfo

ncRNA ID	novel_zma_miR3850
Species	Zea mays
Class	miRNA
Genome position	Chr10:140561900-140561969 [+]
Reference genome	RefGen_v4
Source	SRR2287159;SRR2089701
Length	24
Mature sequence(if miRNA)	47 - AGUGACUAAUAAAAAGAAACGGAG - 70
Stem-loop(if miRNA)	--                              CAA   CCGUUUCUUUUUAUUAGUCGCUGGAUAGUG   U   ||||||||||||||||||||||||||||||   GGCAAAGAAAAAUAAUCAGUGACCUAUCAC   U GA                              AUU
Stem-loop sequence	CCGUUUCUUUUUAUUAGUCGCUGGAUAGUGCAAUUUUACACUAUCCAGUGACUAAUAAAAAGAAACGGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403367.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||||| targets:1   CUCCGUUUCUUUUUAUUAGUCACU   24 Target Full Sequence	0.0	Sequence 1492 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235497.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||||| targets:1   CUCCGUUUCUUUUUAUUAGUCACU   24 Target Full Sequence	0.0	Sequence 1492 from Patent EP2985353	NA	coding protein	psRNATarget
JB163828.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||||| targets:1   CUCCGUUUCUUUUUAUUAGUCACU   24 Target Full Sequence	0.0	Sequence 1492 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008658752.2	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||=|| targets:2050   CUCCGUUUCUUUUUAUUAGUCGCU   2073 Target Full Sequence	1.5	PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542418.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||=|| targets:1983   CUCCGUUUCUUUUUAUUAGUCGCU   2006 Target Full Sequence	1.5	PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008675770.2	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||=|| targets:1814   CUCCGUUUCUUUUUAUUAGUCGCU   1837 Target Full Sequence	1.5	PREDICTED: Zea mays pectinesterase-like (LOC103650113), mRNA	NA	coding protein	psRNATarget
XM_008656936.2	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||=|| targets:170   CUCCGUUUCUUUUUAUUAGUCGCU   193 Target Full Sequence	1.5	PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381500), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669400.2	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||=|| targets:1606   CUCCGUUUCUUUUUAUUAGUCGCU   1629 Target Full Sequence	1.5	PREDICTED: Zea mays Pentatricopeptide repeat-containing protein PNM1 mitochondrial (LOC100274849), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT024153.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||=|| targets:196   CUCCGUUUCUUUUUAUUAGUCGCU   219 Target Full Sequence	1.5	Zea mays clone EL01N0438E01 mRNA sequence	NA	coding protein	psRNATarget
EZ061772.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||=|| targets:190   CUCCGUUUCUUUUUAUUAGUCGCU   213 Target Full Sequence	1.5	TSA: Zea mays contig62894, mRNA sequence	NA	coding protein	psRNATarget
EU973473.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||=|| targets:655   CUCCGUUUCUUUUUAUUAGUCGCU   678 Target Full Sequence	1.5	Zea mays clone 399411 mRNA sequence	NA	coding protein	psRNATarget
JB166321.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||=|| targets:11   CUCCGUUUCUUUUUAUUAGUCGCU   34 Target Full Sequence	1.5	Sequence 3985 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237990.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||=|| targets:11   CUCCGUUUCUUUUUAUUAGUCGCU   34 Target Full Sequence	1.5	Sequence 3985 from Patent EP2985353	NA	coding protein	psRNATarget
HI405860.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||=|| targets:11   CUCCGUUUCUUUUUAUUAGUCGCU   34 Target Full Sequence	1.5	Sequence 3985 from Patent EP2074227	NA	coding protein	psRNATarget
HI403365.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||=|| targets:1   CUCCGUUUCUUUUUAUUAGUCGCU   24 Target Full Sequence	1.5	Sequence 1490 from Patent EP2074227	NA	coding protein	psRNATarget
JB163826.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||=|| targets:1   CUCCGUUUCUUUUUAUUAGUCGCU   24 Target Full Sequence	1.5	Sequence 1490 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235495.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||=|| targets:1   CUCCGUUUCUUUUUAUUAGUCGCU   24 Target Full Sequence	1.5	Sequence 1490 from Patent EP2985353	NA	coding protein	psRNATarget
LQ237958.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||=|| targets:6   CUCCGUUUCUUUUUAUUAGUCGCU   29 Target Full Sequence	1.5	Sequence 3953 from Patent EP2985353	NA	coding protein	psRNATarget
LQ237960.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||=|| targets:6   CUCCGUUUCUUUUUAUUAGUCGCU   29 Target Full Sequence	1.5	Sequence 3955 from Patent EP2985353	NA	coding protein	psRNATarget
HI405830.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||=|| targets:6   CUCCGUUUCUUUUUAUUAGUCGCU   29 Target Full Sequence	1.5	Sequence 3955 from Patent EP2074227	NA	coding protein	psRNATarget
HI405828.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||=|| targets:6   CUCCGUUUCUUUUUAUUAGUCGCU   29 Target Full Sequence	1.5	Sequence 3953 from Patent EP2074227	NA	coding protein	psRNATarget
JB166289.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||=|| targets:6   CUCCGUUUCUUUUUAUUAGUCGCU   29 Target Full Sequence	1.5	Sequence 3953 from Patent EP2559767	NA	coding protein	psRNATarget
JB166291.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||=|| targets:6   CUCCGUUUCUUUUUAUUAGUCGCU   29 Target Full Sequence	1.5	Sequence 3955 from Patent EP2559767	NA	coding protein	psRNATarget
JB163834.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||=|| targets:1   CUCCGUUUCUUUUUAUUAGUCGCU   24 Target Full Sequence	1.5	Sequence 1498 from Patent EP2559767	NA	coding protein	psRNATarget
HI403385.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||=|| targets:1   CUCCGUUUCUUUUUAUUAGUCGCU   24 Target Full Sequence	1.5	Sequence 1510 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235515.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||=|| targets:1   CUCCGUUUCUUUUUAUUAGUCGCU   24 Target Full Sequence	1.5	Sequence 1510 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235503.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||=|| targets:1   CUCCGUUUCUUUUUAUUAGUCGCU   24 Target Full Sequence	1.5	Sequence 1498 from Patent EP2985353	NA	coding protein	psRNATarget
JB163846.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||=|| targets:1   CUCCGUUUCUUUUUAUUAGUCGCU   24 Target Full Sequence	1.5	Sequence 1510 from Patent EP2559767	NA	coding protein	psRNATarget
HI403373.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||||||=|| targets:1   CUCCGUUUCUUUUUAUUAGUCGCU   24 Target Full Sequence	1.5	Sequence 1498 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008664460.2	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||=|||||||||||||||||=|| targets:119   CUCUGUUUCUUUUUAUUAGUCGCU   142 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103641061), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU970288.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   ||=||||||||||||||||||=|| targets:1337   CUUCGUUUCUUUUUAUUAGUCGCU   1360 Target Full Sequence	1.5	Zea mays clone 343094 metal tolerance protein C3 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001328133.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   ||||||||=||||||||||||=|| targets:770   CUCCGUUUUUUUUUAUUAGUCGCU   793 Target Full Sequence	2.5	Zea mays Methionyl-tRNA synthetase (LOC100384454), mRNA	NA	coding protein	psRNATarget
BT070166.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   ||||||||=||||||||||||=|| targets:770   CUCCGUUUUUUUUUAUUAGUCGCU   793 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0141C23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008664463.2	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||=|||||||||||||||||=|| targets:99   CUCUGUUUCUUUUUAUUAGUCGCU   122 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103641061), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020544902.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   *||||||||||||||||||||=|| targets:3156   AUCCGUUUCUUUUUAUUAGUCGCU   3179 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100216637 (LOC100216637), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544903.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   *||||||||||||||||||||=|| targets:3147   AUCCGUUUCUUUUUAUUAGUCGCU   3170 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100216637 (LOC100216637), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT037092.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   *||||||||||||||||||||=|| targets:1090   AUCCGUUUCUUUUUAUUAGUCGCU   1113 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0154F16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143050.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   *||||||||||||||||||||=|| targets:1090   AUCCGUUUCUUUUUAUUAGUCGCU   1113 Target Full Sequence	1.5	Zea mays uncharacterized LOC100216637 (LOC100216637), mRNA	NA	coding protein	psRNATarget
JB163740.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||*|||||| targets:17   CUCCGUUUCUUUUUAUUUGUCACU   40 Target Full Sequence	1.5	Sequence 1404 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235409.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||*|||||| targets:17   CUCCGUUUCUUUUUAUUUGUCACU   40 Target Full Sequence	1.5	Sequence 1404 from Patent EP2985353	NA	coding protein	psRNATarget
HI403279.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||||||||||||||||*|||||| targets:17   CUCCGUUUCUUUUUAUUUGUCACU   40 Target Full Sequence	1.5	Sequence 1404 from Patent EP2074227	NA	coding protein	psRNATarget
HI403313.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   ||||*||||||||||||||||=|| targets:1   CUCCAUUUCUUUUUAUUAGUCGCU   24 Target Full Sequence	1.5	Sequence 1438 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235443.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   ||||*||||||||||||||||=|| targets:1   CUCCAUUUCUUUUUAUUAGUCGCU   24 Target Full Sequence	1.5	Sequence 1438 from Patent EP2985353	NA	coding protein	psRNATarget
JB163774.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   ||||*||||||||||||||||=|| targets:1   CUCCAUUUCUUUUUAUUAGUCGCU   24 Target Full Sequence	1.5	Sequence 1438 from Patent EP2559767	NA	coding protein	psRNATarget
HI403339.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   ||||*||||||||||||||||=|| targets:1   CUCCAUUUCUUUUUAUUAGUCGCU   24 Target Full Sequence	1.5	Sequence 1464 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235469.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   ||||*||||||||||||||||=|| targets:1   CUCCAUUUCUUUUUAUUAGUCGCU   24 Target Full Sequence	1.5	Sequence 1464 from Patent EP2985353	NA	coding protein	psRNATarget
JB163800.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   ||||*||||||||||||||||=|| targets:1   CUCCAUUUCUUUUUAUUAGUCGCU   24 Target Full Sequence	1.5	Sequence 1464 from Patent EP2559767	NA	coding protein	psRNATarget
EU954394.1	ncRNA:24   GAGGCAAAGAAAAAUAAUCAGUGA   1   |||=||||=||||||||*|||||| targets:1160   CUCUGUUUUUUUUUAUUUGUCACU   1183 Target Full Sequence	2.5	Zea mays clone 1465260 dihydrodipicolinate reductase mRNA, complete cds	NA	coding protein	psRNATarget