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BaseInfo

ncRNA ID novel_zma_miR3848
Species Zea mays
Class miRNA
Genome position Chr5:9976467-9976574 [-]
Reference genome RefGen_v4
Source SRR2287159
Length 24
Mature sequence(if miRNA) 85 - GUUUGUGUCGGAUUAGUGGGUCGG - 108
Stem-loop(if miRNA) --             -----   U  -    GAACGAUUCCUAGCCGGAUUGCUUCU
  GUUUGUGUCGGAU     UAG GG GUCG                          C
  |||||||||||||     ||| || ||||                          U
  CAAAUGCAGCCUA     GGC CU AGCA                          A
AG             ACGUG   -  U    AGGUCGAUUAAUUUCAAAUAUAUUUA
Stem-loop sequence GUUUGUGUCGGAUUAGUGGGUCGGAACGAUUCCUAGCCGGAUUGCUUCUCUAAUUUAUAUAAACUUUAAUUAGCUGGAACGAUUCCGGGUGCAAUCCGACGUAAACGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ063705.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  ||||||||||||||||||||||||
targets:340   CCGACCCACUAAUCCGACACAAAC   363

0.0 TSA: Zea mays contig64827, mRNA sequence NA coding protein psRNATarget
HI405964.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  |||||||||||||||||=||||||
targets:102   CCGACCCACUAAUCCGAUACAAAC   125

1.5 Sequence 4089 from Patent EP2074227 NA coding protein psRNATarget
JB166425.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  |||||||||||||||||=||||||
targets:102   CCGACCCACUAAUCCGAUACAAAC   125

1.5 Sequence 4089 from Patent EP2559767 NA coding protein psRNATarget
LQ238094.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  |||||||||||||||||=||||||
targets:102   CCGACCCACUAAUCCGAUACAAAC   125

1.5 Sequence 4089 from Patent EP2985353 NA coding protein psRNATarget
JB167800.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  ||||||||||||||||=|||||||
targets:120   CCGACCCACUAAUCCGGCACAAAC   143

1.5 Sequence 5464 from Patent EP2559767 NA coding protein psRNATarget
LQ239469.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  ||||||||||||||||=|||||||
targets:120   CCGACCCACUAAUCCGGCACAAAC   143

1.5 Sequence 5464 from Patent EP2985353 NA coding protein psRNATarget
HI407339.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  ||||||||||||||||=|||||||
targets:120   CCGACCCACUAAUCCGGCACAAAC   143

1.5 Sequence 5464 from Patent EP2074227 NA coding protein psRNATarget
XM_008676565.2
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  ||||||||=|||||||=|||||||
targets:1179   CCGACCCAUUAAUCCGGCACAAAC   1202

2.5 PREDICTED: Zea mays NDR1/HIN1-like protein 10 (LOC103650970), mRNA NA coding protein psRNATarget
EU971977.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  |||||||||*||||||||||||||
targets:816   CCGACCCACCAAUCCGACACAAAC   839

1.0 Zea mays clone 373036 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU973171.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  |||||||||*||||||||||||||
targets:747   CCGACCCACCAAUCCGACACAAAC   770

1.0 Zea mays clone 394490 mRNA sequence NA coding protein psRNATarget
XM_008670105.2
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  |||||||||*||||||||||||||
targets:1106   CCGACCCACCAAUCCGACACAAAC   1129

1.0 PREDICTED: Zea mays uncharacterized LOC100382252 (LOC100382252), transcript variant X1, mRNA NA coding protein psRNATarget
BT063644.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  |||||||||*||||||||||||||
targets:1748   CCGACCCACCAAUCCGACACAAAC   1771

1.0 Zea mays full-length cDNA clone ZM_BFc0089G02 mRNA, complete cds NA coding protein psRNATarget
NM_001175005.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  |||||||||*||||||||||||||
targets:1748   CCGACCCACCAAUCCGACACAAAC   1771

1.0 Zea mays uncharacterized LOC100382252 (LOC100382252), mRNA NA coding protein psRNATarget
NM_001158559.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  |||||||||*||||||||||||||
targets:1818   CCGACCCACCAAUCCGACACAAAC   1841

1.0 Zea mays uncharacterized LOC100285668 (IDP752), mRNA NA coding protein psRNATarget
EU973341.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  |||||||||*||||||||||||||
targets:1818   CCGACCCACCAAUCCGACACAAAC   1841

1.0 Zea mays clone 397038 catalytic/ protein phosphatase type 2C mRNA, complete cds NA coding protein psRNATarget
XM_020538654.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  |||||||||*||||||||||||||
targets:856   CCGACCCACCAAUCCGACACAAAC   879

1.0 PREDICTED: Zea mays polyamine transporter PUT1 (LOC103643034), transcript variant X1, mRNA NA coding protein psRNATarget
LQ238034.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  ||||||||=*||||||||||||||
targets:94   CCGACCCAUCAAUCCGACACAAAC   117

2.0 Sequence 4029 from Patent EP2985353 NA coding protein psRNATarget
JB166365.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  ||||||||=*||||||||||||||
targets:94   CCGACCCAUCAAUCCGACACAAAC   117

2.0 Sequence 4029 from Patent EP2559767 NA coding protein psRNATarget
HI405904.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  ||||||||=*||||||||||||||
targets:94   CCGACCCAUCAAUCCGACACAAAC   117

2.0 Sequence 4029 from Patent EP2074227 NA coding protein psRNATarget
HI405926.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  ||||||||=*||||||||||||||
targets:94   CCGACCCAUCAAUCCGACACAAAC   117

2.0 Sequence 4051 from Patent EP2074227 NA coding protein psRNATarget
LQ238056.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  ||||||||=*||||||||||||||
targets:94   CCGACCCAUCAAUCCGACACAAAC   117

2.0 Sequence 4051 from Patent EP2985353 NA coding protein psRNATarget
JB166387.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  ||||||||=*||||||||||||||
targets:94   CCGACCCAUCAAUCCGACACAAAC   117

2.0 Sequence 4051 from Patent EP2559767 NA coding protein psRNATarget
JB166332.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  |||||||||*||||||=|||||||
targets:13   CCGACCCACCAAUCCGGCACAAAC   36

2.5 Sequence 3996 from Patent EP2559767 NA coding protein psRNATarget
HI405871.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  |||||||||*||||||=|||||||
targets:13   CCGACCCACCAAUCCGGCACAAAC   36

2.5 Sequence 3996 from Patent EP2074227 NA coding protein psRNATarget
LQ238001.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  |||||||||*||||||=|||||||
targets:13   CCGACCCACCAAUCCGGCACAAAC   36

2.5 Sequence 3996 from Patent EP2985353 NA coding protein psRNATarget
EU941248.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  |||||||||*||||||=|||||||
targets:207   CCGACCCACCAAUCCGGCACAAAC   230

2.5 Zea mays clone 1431203 mRNA sequence NA coding protein psRNATarget
XM_020549360.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  ||*||=||||||||||||||||||
targets:1215   CCAACUCACUAAUCCGACACAAAC   1238

1.0 PREDICTED: Zea mays WRKY transcription factor WRKY76 (LOC103647425), mRNA NA coding protein psRNATarget
XM_020540976.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  |||||||||*||||||=|||||||
targets:4505   CCGACCCACCAAUCCGGCACAAAC   4528

2.5 PREDICTED: Zea mays indole-3-acetaldehyde oxidase-like (LOC103631977), transcript variant X1, mRNA NA coding protein psRNATarget
BT068430.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  |||||||||*|||||||||*||||
targets:546   CCGACCCACCAAUCCGACAGAAAC   569

2.5 Zea mays full-length cDNA clone ZM_BFb0175H08 mRNA, complete cds NA coding protein psRNATarget
LQ238067.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  |*|||||||*||||||=|||||||
targets:95   CAGACCCACCAAUCCGGCACAAAC   118

2.5 Sequence 4062 from Patent EP2985353 NA coding protein psRNATarget
HI405937.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  |*|||||||*||||||=|||||||
targets:95   CAGACCCACCAAUCCGGCACAAAC   118

2.5 Sequence 4062 from Patent EP2074227 NA coding protein psRNATarget
JB166398.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  |*|||||||*||||||=|||||||
targets:95   CAGACCCACCAAUCCGGCACAAAC   118

2.5 Sequence 4062 from Patent EP2559767 NA coding protein psRNATarget
EU975407.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  ||*||||||*||||||=|||||||
targets:562   CCUACCCACCAAUCCGGCACAAAC   585

2.5 Zea mays clone 489701 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008654752.2
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  ||*||||||*||||||=|||||||
targets:2764   CCCACCCACCAAUCCGGCACAAAC   2787

2.5 PREDICTED: Zea mays putative cysteine-rich receptor-like protein kinase 35 (LOC103633070), mRNA NA coding protein psRNATarget
BT066445.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  |||*=||||*||||||=|||||||
targets:945   CCGCUCCACCAAUCCGGCACAAAC   968

2.5 Zea mays full-length cDNA clone ZM_BFc0173D16 mRNA, complete cds NA coding protein psRNATarget
NM_001175834.1
ncRNA:24   GGCUGGGUGAUUAGGCUGUGUUUG   1
  |||*=||||*||||||=|||||||
targets:945   CCGCUCCACCAAUCCGGCACAAAC   968

2.5 Zea mays 14-dihydroxy-2-naphthoyl-CoA thioesterase 1 (LOC100383169), mRNA NA coding protein psRNATarget
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