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BaseInfo

ncRNA ID	novel_zma_miR3847
Species	Zea mays
Class	miRNA
Genome position	Chr1:251742945-251743109 [+]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2638137;SRR2647343;SRR2647385;SRR2647386;SRR2647387;SRR2647388;SRR2647389;SRR2647391;SRR2647467;SRR1583943
Length	23
Mature sequence(if miRNA)	1 - CAAUUAAGCGAUCUGGUGCAUCC - 23
Stem-loop(if miRNA)	--C                G      AUA          A  GA           UAUUGAACCCUUUCCAC   AAAUCUAGUAGCU    AAUUAAGCGAUCUGGU CAUCCA   AAAAUCCAAC AU  CUGAUAUUUUA                 CUA             A    |||||||||||||||| ||||||   |||||||||| ||  |||||||||||                 |||    UUAGUUCGCUAGAUCA GUAGGU   UUUUAGGUUG UA  GACUAUAAAAU                 UCG             U UAU                A      AUA          C  AC           -----------CCACCU   CCAAUUUAUAUUU
Stem-loop sequence	CAAUUAAGCGAUCUGGUGCAUCCAAUAAAAAUCCAACAAUGACUGAUAUUUUAUAUUGAACCCUUUCCACCUAAAAUCUAGUAGCUAUUUUAUAUUUAACCGCUUCCACCUAAAAUAUCAGCAAUCGUUGGAUUUUAUAUGGAUGAACUAGAUCGCUUGAUUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU954880.1	ncRNA:23   CCUACGUGGUCUAGCGAAUUAAC   1   ||||||||||||||||||=|||| targets:775   GGAUGCACCAGAUCGCUUGAUUG   797 Target Full Sequence	1.5	Zea mays clone 1489976 ubiquitin-fusion protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008661850.2	ncRNA:23   CCUACGUGGUCUAGCGAAUUAAC   1   ||||||||||||||||||=|||| targets:776   GGAUGCACCAGAUCGCUUGAUUG   798 Target Full Sequence	1.5	PREDICTED: Zea mays membrane-anchored ubiquitin-fold protein 1 (LOC103639057), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008661851.2	ncRNA:23   CCUACGUGGUCUAGCGAAUUAAC   1   ||||||||||||||||||=|||| targets:789   GGAUGCACCAGAUCGCUUGAUUG   811 Target Full Sequence	1.5	PREDICTED: Zea mays membrane-anchored ubiquitin-fold protein 1 (LOC103639057), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020551352.1	ncRNA:23   CCUACGUGGUCUAGCGAAUUAAC   1   |||||||||||||||=||||||| targets:178   GGAUGCACCAGAUCGUUUAAUUG   200 Target Full Sequence	1.5	PREDICTED: Zea mays putative glutathione S-transferase family protein (LOC100272773), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020538318.1	ncRNA:23   CCUACGUGGUCUAGCGAAUUAAC   1   ||||||||||||||||||=|||| targets:169   GGAUGCACCAGAUCGCUUGAUUG   191 Target Full Sequence	1.5	PREDICTED: Zea mays zinc finger CCCH domain-containing protein 45 (LOC103626282), mRNA	NA	coding protein	psRNATarget
XM_008676293.2	ncRNA:23   CCUACGUGGUCUAGCGAAUUAAC   1   ||||||||||||||||||=|||| targets:1667   GGAUGCACCAGAUCGCUUGAUUG   1689 Target Full Sequence	1.5	PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103650724), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008676292.2	ncRNA:23   CCUACGUGGUCUAGCGAAUUAAC   1   ||||||||||||||||||=|||| targets:1839   GGAUGCACCAGAUCGCUUGAUUG   1861 Target Full Sequence	1.5	PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103650724), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676294.2	ncRNA:23   CCUACGUGGUCUAGCGAAUUAAC   1   ||||||||||||||||||=|||| targets:2012   GGAUGCACCAGAUCGCUUGAUUG   2034 Target Full Sequence	1.5	PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103650724), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008662537.2	ncRNA:23   CCUACGUGGUCUAGCGAAUUAAC   1   *||*||||=||||||=||||||| targets:2368   AGACGCACUAGAUCGUUUAAUUG   2390 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g16010 (LOC103639844), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544010.1	ncRNA:23   CCUACGUGGUCUAGCGAAUUAAC   1   *||*||||=||||||=||||||| targets:2604   AGACGCACUAGAUCGUUUAAUUG   2626 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g16010 (LOC103639844), transcript variant X1, mRNA	NA	coding protein	psRNATarget