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BaseInfo

ncRNA ID	novel_zma_miR3844
Species	Zea mays
Class	miRNA
Genome position	Chr5:82711757-82711841 [-]
Reference genome	RefGen_v4
Source	SRR2287159
Length	24
Mature sequence(if miRNA)	62 - AGGGAUUGAAGUGUAUUUUAGGGA - 85
Stem-loop(if miRNA)	---AG       A   -   UUU   --G      AG GA   UAG      GGAUUGA GUG UAU   AGG   AUUGAA  G  AAU   U      ||||||| ||| |||   |||   ||||||  |  |||      CCUAACU CAC AUA   UCC   UAACUU  C  UUA   U CCUCA       C   C   --U   ACA      CA -A   UAC
Stem-loop sequence	AGGGAUUGAAGUGUAUUUUAGGGAUUGAAAGGGAAAUUAGUUCAUAUUACACUUCAAUACACCUUAUACCACCUCAAUCCACUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT061407.1	ncRNA:24   AGGGAUUUUAUGUGAAGUUAGG-GA   1   ||||||||||||||||||||||-|| targets:1071   UCCCUAAAAUACACUUCAAUCCACU   1095 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0143D12 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008665228.2	ncRNA:24   AGGGAUUUUAUGUGAAGUUAGG-GA   1   ||||||||||||||||||||||-|| targets:723   UCCCUAAAAUACACUUCAAUCCACU   747 Target Full Sequence	3.0	PREDICTED: Zea mays RNA-binding protein 3 (LOC103641920), mRNA	NA	coding protein	psRNATarget
HI406961.1	ncRNA:24   AGGGAUUUUAUGUGAAGUUAGG-GA   1   ||||||||||||||||||||||-|| targets:62   UCCCUAAAAUACACUUCAAUCCACU   86 Target Full Sequence	3.0	Sequence 5086 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239091.1	ncRNA:24   AGGGAUUUUAUGUGAAGUUAGG-GA   1   ||||||||||||||||||||||-|| targets:62   UCCCUAAAAUACACUUCAAUCCACU   86 Target Full Sequence	3.0	Sequence 5086 from Patent EP2985353	NA	coding protein	psRNATarget
JB167422.1	ncRNA:24   AGGGAUUUUAUGUGAAGUUAGG-GA   1   ||||||||||||||||||||||-|| targets:62   UCCCUAAAAUACACUUCAAUCCACU   86 Target Full Sequence	3.0	Sequence 5086 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020541827.1	ncRNA:24   AGGGAUUUUAUGUGAAGUUAGGGA   1   *|=|*|||=|=||||||||||||* targets:1190   GCUCGAAAGUGCACUUCAAUCCCA   1213 Target Full Sequence	3.0	PREDICTED: Zea mays AMSH-like ubiquitin thioesterase 2 (LOC100191225), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU962833.1	ncRNA:24   AGGGAUUUUAUGUGAAGUUAGGGA   1   *|=|*|||=|=||||||||||||* targets:959   GCUCGAAAGUGCACUUCAAUCCCA   982 Target Full Sequence	3.0	Zea mays clone 245865 mRNA sequence	NA	coding protein	psRNATarget
NM_001136659.1	ncRNA:24   AGGGAUUUUAUGUGAAGUUAGGGA   1   *|=|*|||=|=||||||||||||* targets:922   GCUCGAAAGUGCACUUCAAUCCCA   945 Target Full Sequence	3.0	Zea mays AMSH-like ubiquitin thioesterase 2 (LOC100191225), mRNA	NA	coding protein	psRNATarget
BT033261.1	ncRNA:24   AGGGAUUUUAUGUGAAGUUAGGGA   1   *|=|*|||=|=||||||||||||* targets:922   GCUCGAAAGUGCACUUCAAUCCCA   945 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0197O01 mRNA, complete cds	NA	coding protein	psRNATarget
BT055368.1	ncRNA:24   AGGGAUUUUAUGUGAAGUUAGGGA   1   *|=|*|||=|=||||||||||||* targets:839   GCUCGAAAGUGCACUUCAAUCCCA   862 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0085I18 mRNA, complete cds	NA	coding protein	psRNATarget