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BaseInfo

ncRNA ID	novel_zma_miR3843
Species	Zea mays
Class	miRNA
Genome position	Chr5:83120242-83120331 [-]
Reference genome	RefGen_v4
Source	SRR2287159
Length	24
Mature sequence(if miRNA)	1 - UAGUGGCACACAAGGGAUGAGUAU - 24
Stem-loop(if miRNA)	--             A       ----   CCCAC    C    ACAC   ACUCAUUCCUUGU UGCCACU    GGC     AUGU AUAG    C   ||||||||||||| |||||||    |||     |||| ||||   UGAGUAGGGAACA ACGGUGA    CCG     UACA UAUU    A UA             C       UUCA   -UAUA    -    AAAA
Stem-loop sequence	ACUCAUUCCUUGUAUGCCACUGGCCCCACAUGUCAUAGACACCAAAAAUUAUACAUAUAUGCCACUUAGUGGCACACAAGGGAUGAGUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU942982.1	ncRNA:24   UAUGAGUAGGGAACACACGGUGAU   1   |||||||||||||||||||||||= targets:32   AUACUCAUCCCUUGUGUGCCACUG   55 Target Full Sequence	1.0	Zea mays clone 1548806 mRNA sequence	NA	coding protein	psRNATarget
BT036355.1	ncRNA:24   UAUGAGUAGGGAACACACGGUGAU   1   |||||||||||||||||||||||= targets:951   AUACUCAUCCCUUGUGUGCCACUG   974 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0108G21 mRNA, complete cds	NA	coding protein	psRNATarget
EU956996.1	ncRNA:24   UAUGAGUAGGGAACACACGGUGAU   1   |||||||||||||||||||||=|| targets:1562   AUACUCAUCCCUUGUGUGCCAUUA   1585 Target Full Sequence	1.5	Zea mays clone 1579828 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU967272.1	ncRNA:24   UAUGAGUAGGGAACACACGGUGAU   1   ||||||||=||||||||||||||= targets:537   AUACUCAUUCCUUGUGUGCCACUG   560 Target Full Sequence	2.0	Zea mays clone 300934 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU949300.1	ncRNA:24   UAUGAGUAGGGAACACACGGUGAU   1   ||||||||=||||||||||||||= targets:120   AUACUCAUUCCUUGUGUGCCACUG   143 Target Full Sequence	2.0	Zea mays clone 400899 mRNA sequence	NA	coding protein	psRNATarget
BT040698.1	ncRNA:24   UAUGAGUAGGGAACACACGGUGAU   1   ||||||=|=||||||||||||||= targets:636   AUACUCGUUCCUUGUGUGCCACUG   659 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0119B19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147730.1	ncRNA:24   UAUGAGUAGGGAACACACGGUGAU   1   ||||||=|=||||||||||||||= targets:636   AUACUCGUUCCUUGUGUGCCACUG   659 Target Full Sequence	3.0	Zea mays Vacuolar protein sorting-associated protein 24 homolog 1 (umc2748), mRNA	NA	coding protein	psRNATarget
XM_020547541.1	ncRNA:24   UAUGAGUAGGGAACACACGGUGAU   1   ||||||=|=||||||||||||||= targets:4235   AUACUCGUUCCUUGUGUGCCACUG   4258 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100273682 (LOC100273682), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ080420.1	ncRNA:24   UAUGAGUAGGGAACACACGGUGAU   1   |||*||||=||||||||||||||= targets:58   AUAGUCAUUCCUUGUGUGCCACUG   81 Target Full Sequence	2.0	TSA: Zea mays contig16059, mRNA sequence	NA	coding protein	psRNATarget
XM_008658241.2	ncRNA:24   UAUGAGUAGGGAACACACGGUGAU   1   |||-||||||||||||||=||||| targets:1518   AUA-UCAUCCCUUGUGUGUCACUA   1540 Target Full Sequence	1.5	PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB167298.1	ncRNA:24   UAUGAGUAGGGAACACACGGUGAU   1   =|||||||=*|||||||||||||= targets:7   GUACUCAUUACUUGUGUGCCACUG   30 Target Full Sequence	3.0	Sequence 4962 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238967.1	ncRNA:24   UAUGAGUAGGGAACACACGGUGAU   1   =|||||||=*|||||||||||||= targets:7   GUACUCAUUACUUGUGUGCCACUG   30 Target Full Sequence	3.0	Sequence 4962 from Patent EP2985353	NA	coding protein	psRNATarget
HI406837.1	ncRNA:24   UAUGAGUAGGGAACACACGGUGAU   1   =|||||||=*|||||||||||||= targets:7   GUACUCAUUACUUGUGUGCCACUG   30 Target Full Sequence	3.0	Sequence 4962 from Patent EP2074227	NA	coding protein	psRNATarget