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BaseInfo

ncRNA ID novel_zma_miR3842
Species Zea mays
Class miRNA
Genome position Chr5:31425576-31425677 [+]
Reference genome RefGen_v4
Source SRR2287159
Length 23
Mature sequence(if miRNA) 1 - AUAGGAUGUUUCCACUGACGGUU - 23
Stem-loop(if miRNA) --                 A     AA  UAAGA                U
  AUAGGAUGUUUCCACUG CGGUU  GU     UAACCGCCAGUGGAAA C
  ||||||||||||||||| |||||  ||     ||||||||||||||||
  UAUCCUACAAAGGUGAC GCCAA  CA     GUUGGCGGUCACUUUU A
UU                 C     CA  UUGUG                A
Stem-loop sequence AUAGGAUGUUUCCACUGACGGUUAAGUUAAGAUAACCGCCAGUGGAAAUCAAUUUUCACUGGCGGUUGGUGUUACACAACCGCCAGUGGAAACAUCCUAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ101180.1
ncRNA:23   UUGGCAGUCACCUUUGUAGGAUA   1
  |||||*|||||||||=|||||||
targets:81   AACCGCCAGUGGAAAUAUCCUAU   103

2.5 TSA: Zea mays contig36836, mRNA sequence NA coding protein psRNATarget