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BaseInfo

ncRNA ID osa-miR444a-3p.1
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source miRBase
Length 21
Mature sequence(if miRNA) NA - UUGCUGCCUCAAGCUUGCUGC - NA
Stem-loop(if miRNA) AU     U              A    UG                      -  UG    -C  A
  GCAAU GGGGGCAGCAAGCU GAGG  GCAACUGCAUAAUUUGCAAGAA AU  UUGG  UG A
  ||||| |||||||||||||| ||||  |||||||||||||||||||||| ||  ||||  || G
  CGUUG CCUCCGUCGUUCGA CUCC  CGUUGACGUAUUGAACGUUCUU UA  AGCC  AC A
AC     U              A    GU                      A  GU    AU  U
Stem-loop sequence AUGCAAUUGGGGGCAGCAAGCUAGAGGUGGCAACUGCAUAAUUUGCAAGAAAUUGUUGGCUGAAGAUCAUACCGAUGAUAUUCUUGCAAGUUAUGCAGUUGCUGCCUCAAGCUUGCUGCCUCCUGUUGCCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY345220.1
ncRNA:21   CGUCGUUCGAACUCCGUCGUU   1
  |||||||||||||||||||||
targets:306   GCAGCAAGCUUGAGGCAGCAA   326

0.0 Oryza sativa (japonica cultivar-group) transcription factor MADS23 mRNA, complete cds; alternatively spliced NA coding protein psRNATarget
AY224482.1
ncRNA:21   CGUCGUUCGAACUCCGUCGUU   1
  |||||||||||||||||||||
targets:274   GCAGCAAGCUUGAGGCAGCAA   294

0.0 Oryza sativa (japonica cultivar-group) isolate 29949 MADS box protein-like protein mRNA, complete cds NA coding protein psRNATarget
AY177702.1
ncRNA:21   CGUCGUUCGAACUCCGUCGUU   1
  |||||||||||||||||||||
targets:274   GCAGCAAGCUUGAGGCAGCAA   294

0.0 Oryza sativa (japonica cultivar-group) transcription factor MADS57 mRNA, complete cds NA coding protein psRNATarget
XM_015795358.1
ncRNA:21   CGUCGUUCGAACUCCGUCGUU   1
  |||||||||||||||||||||
targets:435   GCAGCAAGCUUGAGGCAGCAA   455

0.0 PREDICTED: Oryza sativa Japonica Group MADS-box transcription factor 23 (LOC4345644), transcript variant X1, mRNA MADS-box transcription factor 23(LOC4345644) coding protein psRNATarget
CT835372.1
ncRNA:21   CGUCGUUCGAACUCCGUCGUU   1
  |||||||||||||||||||||
targets:571   GCAGCAAGCUUGAGGCAGCAA   591

0.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI222G19, full insert sequence NA coding protein psRNATarget
AK241644.1
ncRNA:21   CGUCGUUCGAACUCCGUCGUU   1
  |||||||||||||||||||||
targets:609   GCAGCAAGCUUGAGGCAGCAA   629

0.0 Oryza sativa Japonica Group cDNA, clone: J065189M04, full insert sequence NA coding protein psRNATarget
XM_015771309.1
ncRNA:21   CGUCGUUCGAACUCCGUCGUU   1
  |||||||||||||||||||||
targets:613   GCAGCAAGCUUGAGGCAGCAA   633

0.0 PREDICTED: Oryza sativa Japonica Group MADS-box transcription factor 57 (LOC4330621), transcript variant X2, mRNA MADS-box transcription factor 57(LOC4330621) coding protein psRNATarget
XM_015771308.1
ncRNA:21   CGUCGUUCGAACUCCGUCGUU   1
  |||||||||||||||||||||
targets:615   GCAGCAAGCUUGAGGCAGCAA   635

0.0 PREDICTED: Oryza sativa Japonica Group MADS-box transcription factor 57 (LOC4330621), transcript variant X1, mRNA MADS-box transcription factor 57(LOC4330621) coding protein psRNATarget
XM_015795361.1
ncRNA:21   CGUCGUUCGAACUCCGUCGUU   1
  |||||||||||||||||||||
targets:435   GCAGCAAGCUUGAGGCAGCAA   455

0.0 PREDICTED: Oryza sativa Japonica Group MADS-box transcription factor 23 (LOC4345644), transcript variant X4, mRNA MADS-box transcription factor 23(LOC4345644) coding protein psRNATarget
XM_015795359.1
ncRNA:21   CGUCGUUCGAACUCCGUCGUU   1
  |||||||||||||||||||||
targets:435   GCAGCAAGCUUGAGGCAGCAA   455

0.0 PREDICTED: Oryza sativa Japonica Group MADS-box transcription factor 23 (LOC4345644), transcript variant X2, mRNA MADS-box transcription factor 23(LOC4345644) coding protein psRNATarget
XM_015795360.1
ncRNA:21   CGUCGUUCGAACUCCGUCGUU   1
  |||||||||||||||||||||
targets:435   GCAGCAAGCUUGAGGCAGCAA   455

0.0 PREDICTED: Oryza sativa Japonica Group MADS-box transcription factor 23 (LOC4345644), transcript variant X3, mRNA MADS-box transcription factor 23(LOC4345644) coding protein psRNATarget

Reference

1 PMID:15805478
"Cloning and characterization of microRNAs from rice";
Sunkar R, Girke T, Jain PK, Zhu JK;
Plant Cell. 17:1397-1411(2005).
2 PMID:18353984
"Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)";
Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ;
Proc Natl Acad Sci U S A. 105:4951-4956(2008).
3 PMID:21791435
"Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)";
Peng T, Lv Q, Zhang J, Li J, Du Y, Zhao Q;
J Exp Bot. 62:4943-4954(2011).
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