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BaseInfo

ncRNA ID	novel_zma_miR3837
Species	Zea mays
Class	miRNA
Genome position	Chr5:171623579-171623697 [-]
Reference genome	RefGen_v4
Source	SRR2287159;SRR2287165
Length	24
Mature sequence(if miRNA)	1 - AAUUGAAUAAAAUGUAGGGACUAA - 24
Stem-loop(if miRNA)	--      AU          C       ACUAU      UC    U                AGUCCC  UAUUUUAUUC AUUUUAG     AAAUUG  AAAU UAGAAACUAGAAUA   ||||||  |||||||||| |||||||     ||||||  |||| |||||||||||||G   UCAGGG  GUAAAAUAAG UAAAAUC     UUUAAC  UUUA AUCUUUGAUUUUGA AA      AU          U       AACGU      GA    U
Stem-loop sequence	AGUCCCAUUAUUUUAUUCCAUUUUAGACUAUAAAUUGUCAAAUUUAGAAACUAGAAUAGAGUUUUAGUUUCUAUAUUUAGCAAUUUUGCAACUAAAAUUGAAUAAAAUGUAGGGACUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020546793.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAG-UUAA   1   ||||||||||||||||||||-|||| targets:3591   UUAGUCCCUACAUUUUAUUCUAAUU   3615 Target Full Sequence	3.0	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546794.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAG-UUAA   1   ||||||||||||||||||||-|||| targets:3554   UUAGUCCCUACAUUUUAUUCUAAUU   3578 Target Full Sequence	3.0	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546795.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAG-UUAA   1   ||||||||||||||||||||-|||| targets:3504   UUAGUCCCUACAUUUUAUUCUAAUU   3528 Target Full Sequence	3.0	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546796.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAG-UUAA   1   ||||||||||||||||||||-|||| targets:3429   UUAGUCCCUACAUUUUAUUCUAAUU   3453 Target Full Sequence	3.0	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X4, mRNA	NA	coding protein	psRNATarget
BT018349.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAG-UUAA   1   ||||||||||||||||||||-|||| targets:585   UUAGUCCCUACAUUUUAUUCUAAUU   609 Target Full Sequence	3.0	Zea mays clone EL01T0403E10.c mRNA sequence	NA	coding protein	psRNATarget
EU941753.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAG-UUAA   1   ||||||||||||||||||||-|||| targets:30   UUAGUCCCUACAUUUUAUUCUAAUU   54 Target Full Sequence	3.0	Zea mays clone 1469712 mRNA sequence	NA	coding protein	psRNATarget
NM_001112512.2	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   ||||||||||||||||||||*||| targets:1569   UUAGUCCCUACAUUUUAUUCUAUU   1592 Target Full Sequence	1.5	Zea mays Aldose reductase (pco147797a), mRNA	NA	coding protein	psRNATarget
NM_001112512.2	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   |||||||||*||||||||||*||| targets:1666   UUAGUCCCUUCAUUUUAUUCUAUU   1689 Target Full Sequence	2.5	Zea mays Aldose reductase (pco147797a), mRNA	NA	coding protein	psRNATarget
XM_020542840.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   ||||||||||||||||||||*||| targets:997   UUAGUCCCUACAUUUUAUUCCAUU   1020 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ060524.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   ||||||||||||||||||||*||| targets:69   UUAGUCCCUACAUUUUAUUCUAUU   92 Target Full Sequence	1.5	TSA: Zea mays contig61646, mRNA sequence	NA	coding protein	psRNATarget
XM_008667360.2	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   ||||||||||=|||||||||*||| targets:1066   UUAGUCCCUAUAUUUUAUUCUAUU   1089 Target Full Sequence	2.5	PREDICTED: Zea mays GNAT transcription factor (LOC103644167), mRNA	NA	coding protein	psRNATarget
BT036582.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   ||||||=|||||||||||||*||| targets:840   UUAGUCUCUACAUUUUAUUCCAUU   863 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139183.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   ||||||=|||||||||||||*||| targets:840   UUAGUCUCUACAUUUUAUUCCAUU   863 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100194130), mRNA	NA	coding protein	psRNATarget
XM_020553397.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   |||||=||||||||||||||*||| targets:577   UUAGUUCCUACAUUUUAUUCCAUU   600 Target Full Sequence	2.5	PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550478.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   |||||||||*||||||||||*||| targets:2648   UUAGUCCCUUCAUUUUAUUCCAUU   2671 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103651221 (LOC103651221), mRNA	NA	coding protein	psRNATarget
BT063047.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   |||||||||*||||||||||*||| targets:2097   UUAGUCCCUUCAUUUUAUUCCAUU   2120 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174830.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   |||||||||*||||||||||*||| targets:2097   UUAGUCCCUUCAUUUUAUUCCAUU   2120 Target Full Sequence	2.5	Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA	NA	coding protein	psRNATarget
BT019141.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   |||||||||*||||||||||*||| targets:292   UUAGUCCCUCCAUUUUAUUCCAUU   315 Target Full Sequence	2.5	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
EU965238.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   |||||||||*|||||||||||*|| targets:1189   UUAGUCCCUUCAUUUUAUUCAUUU   1212 Target Full Sequence	2.5	Zea mays clone 284715 protein COQ10 A mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156492.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   |||||||||*|||||||||||*|| targets:1189   UUAGUCCCUUCAUUUUAUUCAUUU   1212 Target Full Sequence	2.5	Zea mays protein COQ10 A (LOC100283591), mRNA	NA	coding protein	psRNATarget
XM_008680551.2	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   |||||||||*||||||||||*||| targets:836   UUAGUCCCUUCAUUUUAUUCUAUU   859 Target Full Sequence	2.5	PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ052166.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   ||||||||||*|||||||||*||| targets:777   UUAGUCCCUAGAUUUUAUUCCAUU   800 Target Full Sequence	2.5	TSA: Zea mays contig53286, mRNA sequence	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   |||||||||*||||||||||*||| targets:167   UUAGUCCCUCCAUUUUAUUCCAUU   190 Target Full Sequence	2.5	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
JB167174.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   |||||||||*||||||||||*||| targets:167   UUAGUCCCUCCAUUUUAUUCCAUU   190 Target Full Sequence	2.5	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
HI406713.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   |||||||||*||||||||||*||| targets:167   UUAGUCCCUCCAUUUUAUUCCAUU   190 Target Full Sequence	2.5	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
JB163516.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   |||||||||*||||||||||*||| targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50 Target Full Sequence	2.5	Sequence 1180 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235185.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   |||||||||*||||||||||*||| targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50 Target Full Sequence	2.5	Sequence 1180 from Patent EP2985353	NA	coding protein	psRNATarget
HI403052.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   |||||||||*||||||||||*||| targets:27   UUAGUCCCUUCAUUUUAUUCCAUU   50 Target Full Sequence	2.5	Sequence 1177 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235182.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   |||||||||*||||||||||*||| targets:27   UUAGUCCCUUCAUUUUAUUCCAUU   50 Target Full Sequence	2.5	Sequence 1177 from Patent EP2985353	NA	coding protein	psRNATarget
HI403055.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   |||||||||*||||||||||*||| targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50 Target Full Sequence	2.5	Sequence 1180 from Patent EP2074227	NA	coding protein	psRNATarget
JB163513.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   |||||||||*||||||||||*||| targets:27   UUAGUCCCUUCAUUUUAUUCCAUU   50 Target Full Sequence	2.5	Sequence 1177 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235180.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   |||||||||*||||||||||*||| targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50 Target Full Sequence	2.5	Sequence 1175 from Patent EP2985353	NA	coding protein	psRNATarget
HI403050.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   |||||||||*||||||||||*||| targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50 Target Full Sequence	2.5	Sequence 1175 from Patent EP2074227	NA	coding protein	psRNATarget
JB163511.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   |||||||||*||||||||||*||| targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50 Target Full Sequence	2.5	Sequence 1175 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238549.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   |||||||||*||||||||||*||| targets:76   UUAGUCCCUCCAUUUUAUUCCAUU   99 Target Full Sequence	2.5	Sequence 4544 from Patent EP2985353	NA	coding protein	psRNATarget
JB166880.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   |||||||||*||||||||||*||| targets:76   UUAGUCCCUCCAUUUUAUUCCAUU   99 Target Full Sequence	2.5	Sequence 4544 from Patent EP2559767	NA	coding protein	psRNATarget
HI406419.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   |||||||||*||||||||||*||| targets:76   UUAGUCCCUCCAUUUUAUUCCAUU   99 Target Full Sequence	2.5	Sequence 4544 from Patent EP2074227	NA	coding protein	psRNATarget
HI407340.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   |||||||||*|||||||||||*|| targets:7   UUAGUCCCUUCAUUUUAUUCAUUU   30 Target Full Sequence	2.5	Sequence 5465 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239470.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   |||||||||*|||||||||||*|| targets:7   UUAGUCCCUUCAUUUUAUUCAUUU   30 Target Full Sequence	2.5	Sequence 5465 from Patent EP2985353	NA	coding protein	psRNATarget
JB167801.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   |||||||||*|||||||||||*|| targets:7   UUAGUCCCUUCAUUUUAUUCAUUU   30 Target Full Sequence	2.5	Sequence 5465 from Patent EP2559767	NA	coding protein	psRNATarget
EU946945.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   *|||||=||*=||||||||||||| targets:594   GUAGUCUCUCUAUUUUAUUCAAUU   617 Target Full Sequence	3.0	Zea mays clone 325236 mRNA sequence	NA	coding protein	psRNATarget
XM_008676145.2	ncRNA:24   AAUCAGGGAUGUAAAAUAAGUUAA   1   ||=||||||*|||||||||||*|| targets:855   UUGGUCCCUUCAUUUUAUUCAUUU   878 Target Full Sequence	2.5	PREDICTED: Zea mays 23 kDa jasmonate-induced protein-like (LOC103650571), mRNA	NA	coding protein	psRNATarget