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BaseInfo

ncRNA ID novel_zma_miR3835
Species Zea mays
Class miRNA
Genome position Chr7:119799189-119799276 [+]
Reference genome RefGen_v4
Source SRR1583941;SRR5100248;SRR1583942
Length 21
Mature sequence(if miRNA) 1 - GAUUGAGAGGGAUUGGAGGGG - 21
Stem-loop(if miRNA) --       A             U       UC        CAA
  GAUUGAG GGGAUUGGAGGGG UUAAAUC  CUCCUAUA   A
  ||||||| ||||||||||||| |||||||  ||||||||
  CUAACUC CCCUAACCUCCCC AAUUUAG  GAGGAUAU   U
AC       C             U       GA        UUU
Stem-loop sequence GAUUGAGAGGGAUUGGAGGGGUUUAAAUCUCCUCCUAUACAAAUUUUUAUAGGAGAGGAUUUAAUCCCCUCCAAUCCCCCUCAAUCCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001152477.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||||||||||=|||||||||
targets:1073   CCCCUCCAAUCUCUCUCAAUC   1093

1.5 Zea mays Putative SAC3/GANP family protein (LOC100279473), mRNA NA coding protein psRNATarget
BT054307.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||||||||||=|||||||||
targets:1073   CCCCUCCAAUCUCUCUCAAUC   1093

1.5 Zea mays full-length cDNA clone ZM_BFb0234I14 mRNA, complete cds NA coding protein psRNATarget
XM_020538905.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||||||||||=|||||||||
targets:3842   CCCCUCCAAUCUCUCUCAAUC   3862

1.5 PREDICTED: Zea mays Putative SAC3/GANP family protein (LOC100279473), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020538904.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||||||||||=|||||||||
targets:3845   CCCCUCCAAUCUCUCUCAAUC   3865

1.5 PREDICTED: Zea mays Putative SAC3/GANP family protein (LOC100279473), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008649499.2
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||||||||||=|||||||||
targets:3934   CCCCUCCAAUCUCUCUCAAUC   3954

1.5 PREDICTED: Zea mays Putative SAC3/GANP family protein (LOC100279473), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008649500.2
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||||||||||=|||||||||
targets:3934   CCCCUCCAAUCUCUCUCAAUC   3954

1.5 PREDICTED: Zea mays Putative SAC3/GANP family protein (LOC100279473), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020548160.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  ||||||||||=||||||||||
targets:4911   CCCCUCCAAUUCCUCUCAAUC   4931

1.5 PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008670752.2
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  ||||||||||=||||||||||
targets:5138   CCCCUCCAAUUCCUCUCAAUC   5158

1.5 PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001349836.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  =|=|||=||||||||||||||
targets:1408   UCUCUCUAAUCCCUCUCAAUC   1428

2.0 Zea mays RNA-binding (RRM/RBD/RNP motifs) family protein (LOC100193774), mRNA NA coding protein psRNATarget
BT036132.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  =|=|||=||||||||||||||
targets:1465   UCUCUCUAAUCCCUCUCAAUC   1485

2.0 Zea mays full-length cDNA clone ZM_BFb0097H18 mRNA, complete cds NA coding protein psRNATarget
XM_008661613.2
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  ||*||||||||||||||||||
targets:3042   CCACUCCAAUCCCUCUCAAUC   3062

1.0 PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008661611.2
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  ||*||||||||||||||||||
targets:3047   CCACUCCAAUCCCUCUCAAUC   3067

1.0 PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020552749.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||||||||||||*|||||||
targets:3274   CCCCUCCAAUCCCCCUCAAUC   3294

1.5 PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA NA coding protein psRNATarget
BT067503.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||||||||||||*|||||||
targets:1595   CCCCUCCAAUCCCCCUCAAUC   1615

1.5 Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds NA coding protein psRNATarget
NM_001176181.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||||||||||||*|||||||
targets:1595   CCCCUCCAAUCCCCCUCAAUC   1615

1.5 Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA NA coding protein psRNATarget
EZ083462.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||=|||||||||*|||||||
targets:34   CCCUUCCAAUCCCCCUCAAUC   54

2.5 TSA: Zea mays contig19106, mRNA sequence NA coding protein psRNATarget
BT054737.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||||=|||||||||||||*|
targets:192   CCCCUUCAAUCCCUCUCAAAC   212

2.5 Zea mays full-length cDNA clone ZM_BFb0011M02 mRNA, complete cds NA coding protein psRNATarget
BT061531.2
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||||=|||||||*|||||||
targets:844   CCCCUUCAAUCCCCCUCAAUC   864

2.5 Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds NA coding protein psRNATarget
XM_020552750.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*||=||||||||||||||
targets:140   CCCAUCUAAUCCCUCUCAAUC   160

2.0 PREDICTED: Zea mays uncharacterized LOC103654238 (LOC103654238), mRNA NA coding protein psRNATarget
XM_020551510.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||||||||||||*||||||=
targets:1569   CCCCUCCAAUCCCCCUCAAUU   1589

2.5 PREDICTED: Zea mays putative ACT-domain containing protein kinase family protein (LOC100280199), transcript variant X2, mRNA NA coding protein psRNATarget
HI405889.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:77   CCCAUCCAAUCCCACUCAAUC   97

2.5 Sequence 4014 from Patent EP2074227 NA coding protein psRNATarget
JB166350.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:77   CCCAUCCAAUCCCACUCAAUC   97

2.5 Sequence 4014 from Patent EP2559767 NA coding protein psRNATarget
LQ238019.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:77   CCCAUCCAAUCCCACUCAAUC   97

2.5 Sequence 4014 from Patent EP2985353 NA coding protein psRNATarget
LQ237971.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:87   CCCAUCCAAUCCCACUCAAUC   107

2.5 Sequence 3966 from Patent EP2985353 NA coding protein psRNATarget
JB166302.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:87   CCCAUCCAAUCCCACUCAAUC   107

2.5 Sequence 3966 from Patent EP2559767 NA coding protein psRNATarget
HI405841.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:87   CCCAUCCAAUCCCACUCAAUC   107

2.5 Sequence 3966 from Patent EP2074227 NA coding protein psRNATarget
JB163555.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:96   CCCAUCCAAUCCCACUCAAUC   116

2.5 Sequence 1219 from Patent EP2559767 NA coding protein psRNATarget
LQ235135.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:96   CCCAUCCAAUCCCACUCAAUC   116

2.5 Sequence 1130 from Patent EP2985353 NA coding protein psRNATarget
HI403094.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:96   CCCAUCCAAUCCCACUCAAUC   116

2.5 Sequence 1219 from Patent EP2074227 NA coding protein psRNATarget
LQ235224.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:96   CCCAUCCAAUCCCACUCAAUC   116

2.5 Sequence 1219 from Patent EP2985353 NA coding protein psRNATarget
JB163466.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:96   CCCAUCCAAUCCCACUCAAUC   116

2.5 Sequence 1130 from Patent EP2559767 NA coding protein psRNATarget
HI403005.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:96   CCCAUCCAAUCCCACUCAAUC   116

2.5 Sequence 1130 from Patent EP2074227 NA coding protein psRNATarget
EU951448.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:743   CCCAUCCAAUCCCACUCAAUC   763

2.5 Zea mays clone 701961 mRNA sequence NA coding protein psRNATarget
XM_020552889.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:872   CCCAUCCAAUCCCACUCAAUC   892

2.5 PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA NA coding protein psRNATarget
BT085319.2
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:174   CCCAUCCAAUCCCACUCAAUC   194

2.5 Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds NA coding protein psRNATarget
NM_001176594.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:1126   CCCAUCCAAUCCCGCUCAAUC   1146

2.5 Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA NA coding protein psRNATarget
BT068797.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:1126   CCCAUCCAAUCCCGCUCAAUC   1146

2.5 Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds NA coding protein psRNATarget
BT069115.2
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:526   CCCAUCCAAUCCCACUCAAUC   546

2.5 Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds NA coding protein psRNATarget
BT043378.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:1464   CCCAUCCAAUCCCACUCAAUC   1484

2.5 Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds NA coding protein psRNATarget
NM_001148918.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:1464   CCCAUCCAAUCCCACUCAAUC   1484

2.5 Zea mays nodulation homolog 1 (znod1), mRNA NA coding protein psRNATarget
NM_001279968.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:1528   CCCAUCCAAUCCCACUCAAUC   1548

2.5 Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA NA coding protein psRNATarget
BT088232.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:1528   CCCAUCCAAUCCCACUCAAUC   1548

2.5 Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds NA coding protein psRNATarget
XM_008645912.2
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:1617   CCCAUCCAAUCCCGCUCAAUC   1637

2.5 PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA NA coding protein psRNATarget
EU955633.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:1813   CCCAUCCAAUCCCACUCAAUC   1833

2.5 Zea mays clone 1540038 transposon protein mRNA, complete cds NA coding protein psRNATarget
NM_001154031.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:1813   CCCAUCCAAUCCCACUCAAUC   1833

2.5 Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA NA coding protein psRNATarget
XM_008664276.2
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:2045   CCCAUCCAAUCCCGCUCAAUC   2065

2.5 PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X2, mRNA NA coding protein psRNATarget
BT018903.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:2027   CCCAUCCAAUCCCGCUCAAUC   2047

2.5 Zea mays clone EL01T0208C03.d mRNA sequence NA coding protein psRNATarget
XM_008664275.2
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:2138   CCCAUCCAAUCCCGCUCAAUC   2158

2.5 PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008679547.2
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:2498   CCCAUCCAAUCCCACUCAAUC   2518

2.5 PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020541449.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:2798   CCCAUCCAAUCCCGCUCAAUC   2818

2.5 PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA NA coding protein psRNATarget
BT066874.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:1956   CCCAUCCAAUCCCACUCAAUC   1976

2.5 Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds NA coding protein psRNATarget
NM_001175969.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:1956   CCCAUCCAAUCCCACUCAAUC   1976

2.5 Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA NA coding protein psRNATarget
XM_020541448.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:2902   CCCAUCCAAUCCCGCUCAAUC   2922

2.5 PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549843.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:1079   CCCAUCCAAUCCCACUCAAUC   1099

2.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020549841.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:1197   CCCAUCCAAUCCCACUCAAUC   1217

2.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549842.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:1197   CCCAUCCAAUCCCACUCAAUC   1217

2.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547439.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  ||*||||||||||*|||||||
targets:3922   CCACUCCAAUCCCCCUCAAUC   3942

2.5 PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008658241.2
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:1227   CCCAUCCAAUCCCACUCAAUC   1247

2.5 PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020545430.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |||*|||||||||*|||||||
targets:5802   CCCAUCCAAUCCCACUCAAUC   5822

2.5 PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA NA coding protein psRNATarget
JB166363.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |=|*|||||||||*|||||||
targets:78   CUCAUCCAAUCCCACUCAAUC   98

2.5 Sequence 4027 from Patent EP2559767 NA coding protein psRNATarget
LQ238032.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |=|*|||||||||*|||||||
targets:78   CUCAUCCAAUCCCACUCAAUC   98

2.5 Sequence 4027 from Patent EP2985353 NA coding protein psRNATarget
HI405902.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |=|*|||||||||*|||||||
targets:78   CUCAUCCAAUCCCACUCAAUC   98

2.5 Sequence 4027 from Patent EP2074227 NA coding protein psRNATarget
EZ064016.1
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |=|*|||||||||*|||||||
targets:118   CUCAUCCAAUCCCACUCAAUC   138

2.5 TSA: Zea mays contig65139, mRNA sequence NA coding protein psRNATarget
XM_008661718.2
ncRNA:21   GGGGAGGUUAGGGAGAGUUAG   1
  |=|*|||||||||*|||||||
targets:2209   CUCAUCCAAUCCCACUCAAUC   2229

2.5 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA NA coding protein psRNATarget
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