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BaseInfo

ncRNA ID	ath-miRf10046-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	22
Mature sequence(if miRNA)	NA - CUCGACCUGGUGGUCGAGUGGU - NA
Stem-loop(if miRNA)	UG --         U G           -U  G  G A AUGA  G  CACUCGACC C GGGUCGAGUGG  GA GU A G ||||  |  ||||||||| | |||||||||||  || || | U UACU  U  GUGAGCUGG G UCCAGCUCAUC  CU UA U G     GU UG         U G           UU  G  G G
Stem-loop sequence	AUGAUGGCACUCGACCUCGGGGUCGAGUGGUGAGGUGAAGUGGUGAUGUCUUCUACUCGACCUGGUGGUCGAGUGGUUUGUCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EF183194.1	ncRNA:22   UGGUGAGCUGGUGGUCCAGCUC   1   |||||||||||||||||||||| targets:448   ACCACUCGACCACCAGGUCGAG   469 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:22   UGGUGAGCUGGUGGUCCAGCUC   1   |||||||||||*|||||||||| targets:1103   ACCACUCGACCCCCAGGUCGAG   1124 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
NM_103391.1	ncRNA:22   UGGUGAGCUGGUGGUCCAGCUC   1   |||||||||||||*|||||||| targets:1149   ACCACUCGACCACGAGGUCGAG   1170 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
AY227642.1	ncRNA:22   UGGUGAGCUGGUGGUCCAGCUC   1   ||||||||||*||||||||||| targets:807   ACCACUCGACAACCAGGUCGAG   828 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183042.1	ncRNA:22   UGGUGAGCUGGUGGUCCAGCUC   1   |||||||||||||*|||||||| targets:1525   ACCACUCGACCACGAGGUCGAG   1546 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:22   UGGUGAGCUGGUGGUCCAGCUC   1   *|=||||||||*|||||||||| targets:186   UCUACUCGACCCCCAGGUCGAG   207 Target Full Sequence	1.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT025674.1	ncRNA:22   UG-GUGAGCUGGUGGUCCAGCUC   1   ||-=|||||||||||||||||*| targets:106   ACAUACUCGACCACCAGGUCGCG   128 Target Full Sequence	1.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
EF183192.1	ncRNA:22   UGGUGAGCUGGUGGUCCAGCUC   1   |=|||||*||||*||||||||| targets:316   AUCACUCUACCAACAGGUCGAG   337 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:22   UGGUGAGCUGGUGGUCCAGCUC   1   |=|||||*||||*||||||||| targets:364   AUCACUCUACCAACAGGUCGAG   385 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:22   UGGUGAGCUGGUGGUCCAGCUC   1   |=|||||*||||*||||||||| targets:412   AUCACUCUACCAACAGGUCGAG   433 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:22   UGGUGAGCUGGUGGUCCAGCUC   1   |=|||||*|||||||*|||||| targets:655   AUCACUCUACCACCAAGUCGAG   676 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:22   UGGUGAGCUGGUGGUCCAGCUC   1   |=|||||*||||*||||||||| targets:691   AUCACUCUACCAACAGGUCGAG   712 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:22   UGGUGAGCUGGUGGUCCAGCUC   1   |=|||||*||||*||||||||| targets:739   AUCACUCUACCAACAGGUCGAG   760 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:22   UGGUGAGCUGGUGGUCCAGCUC   1   |=|||||*||||*||||||||| targets:787   AUCACUCUACCAACAGGUCGAG   808 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:22   UGGUGAGCUGGUGGUCCAGCUC   1   |=|||||*|||||||*|||||| targets:1030   AUCACUCUACCACCAAGUCGAG   1051 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:22   UGGUGAGCUGGUGGUCCAGCUC   1   |=|||||*||||*||||||||| targets:691   AUCACUCUACCAACAGGUCGAG   712 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:22   UGGUGAGCUGGUGGUCCAGCUC   1   |=|||||*||||*||||||||| targets:739   AUCACUCUACCAACAGGUCGAG   760 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:22   UGGUGAGCUGGUGGUCCAGCUC   1   |=|||||*||||*||||||||| targets:787   AUCACUCUACCAACAGGUCGAG   808 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:22   UGGUGAGCUGGUGGUCCAGCUC   1   |=|||||*|||||||*|||||| targets:1030   AUCACUCUACCACCAAGUCGAG   1051 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
BT012022.1	ncRNA:22   UGGUGAGCUGGUGGUCCAGCUC   1   |=|||||*||||*||||||||| targets:33   AUCACUCUACCAACAGGUCGAG   54 Target Full Sequence	2.5	Arabidopsis thaliana At2g10890 mRNA sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:22   UGGUGAGCUGGUGGUCCAGCUC   1   |||||||*|||||*|||||||| targets:43   ACCACUCAACCACAAGGUCGAG   64 Target Full Sequence	2.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:22   UGGUGAGCUGGUGGUCCAGCUC   1   |=|||||*||||*||||||||| targets:144   AUCACUCUACCAACAGGUCGAG   165 Target Full Sequence	2.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget