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BaseInfo

ncRNA ID novel_zma_miR3826
Species Zea mays
Class miRNA
Genome position Chr4:142359335-142359409 [+]
Reference genome RefGen_v4
Source SRR2287159
Length 24
Mature sequence(if miRNA) 52 - AGGGGCGGACUGUCCGCGGCCUGA - 75
Stem-loop(if miRNA) -G     --           GG    -   C   - CG G
  GGGCC  GGACGGUCCGC  CCUG GUG GAG G  C G
  |||||  |||||||||||  |||| ||| ||| |  |
  UCCGG  CCUGUCAGGCG  GGAC CAU CUC C  G U
AG     CG           -G    G   -   U AU G
Stem-loop sequence GGGGCCGGACGGUCCGCGGCCUGGUGCGAGGCGCGGUGGUACUCUCUACGCAGGGGCGGACUGUCCGCGGCCUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001196968.1
ncRNA:24   AGUCCGGCGCCUGUCAGGCGGGGA   1
  ||||||||||||||||||||||||
targets:1265   UCAGGCCGCGGACAGUCCGCCCCU   1288

0.0 Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA NA coding protein psRNATarget
BT088349.1
ncRNA:24   AGUCCGGCGCCUGUCAGGCGGGGA   1
  ||||||||||||||||||||||||
targets:1265   UCAGGCCGCGGACAGUCCGCCCCU   1288

0.0 Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds NA coding protein psRNATarget
XM_020539115.1
ncRNA:24   AGUCCGGCGCCUGUCAGGCGGGGA   1
  *|||||||||||||||||||||||
targets:2708   CCAGGCCGCGGACAGUCCGCCCCU   2731

0.0 PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA NA coding protein psRNATarget