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BaseInfo

ncRNA ID	novel_zma_miR3825
Species	Zea mays
Class	miRNA
Genome position	Chr4:132565718-132565773 [+]
Reference genome	RefGen_v4
Source	SRR2287159;SRR4237220;SRR4237223;SRR4237225;SRR4237226;SRR4237227
Length	24
Mature sequence(if miRNA)	1 - CGACAAAUAUUCGACAACGGAGGU - 24
Stem-loop(if miRNA)	--              CAA        G   CGACAAAUAUUCGA   CGGAGGUA U   ||||||||||||||   ||||||||   GCUGUUUAUAAGCU   GCCUCCAU A CU              CUG        C
Stem-loop sequence	CGACAAAUAUUCGACAACGGAGGUAGUACUACCUCCGGUCUCGAAUAUUUGUCGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ050211.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*|||||||||||||| targets:38   ACCUCCGUUCUCGAAUAUUUGUCG   61 Target Full Sequence	1.0	TSA: Zea mays contig51330, mRNA sequence	NA	coding protein	psRNATarget
EZ110367.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*|||||||||||||| targets:425   ACCUCCGUUCUCGAAUAUUUGUCG   448 Target Full Sequence	1.0	TSA: Zea mays contig46027, mRNA sequence	NA	coding protein	psRNATarget
EU950930.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*|||||||||||||| targets:345   ACCUCCGUUCUCGAAUAUUUGUCG   368 Target Full Sequence	1.0	Zea mays clone 660705 mRNA sequence	NA	coding protein	psRNATarget
BT017193.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*|||||||||||||| targets:956   ACCUCCGUUCUCGAAUAUUUGUCG   979 Target Full Sequence	1.0	Zea mays clone EL01N0371C09.c mRNA sequence	NA	coding protein	psRNATarget
EU965353.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*|||||||||||||| targets:1024   ACCUCCGUUCUCGAAUAUUUGUCG   1047 Target Full Sequence	1.0	Zea mays clone 285514 CAPIP1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147497.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*|||||||||||||| targets:919   ACCUCCGUUCUCGAAUAUUUGUCG   942 Target Full Sequence	1.0	Zea mays CAPIP1 (LOC100273048), mRNA	NA	coding protein	psRNATarget
BT040068.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*|||||||||||||| targets:919   ACCUCCGUUCUCGAAUAUUUGUCG   942 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0063E17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008676081.2	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*|||||||||||||| targets:2492   ACCUCCGUUCUCGAAUAUUUGUCG   2515 Target Full Sequence	1.0	PREDICTED: Zea mays WPP domain-associated protein (LOC103650495), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676082.2	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*|||||||||||||| targets:2496   ACCUCCGUUCUCGAAUAUUUGUCG   2519 Target Full Sequence	1.0	PREDICTED: Zea mays WPP domain-associated protein (LOC103650495), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ071175.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*|=|||||||||||| targets:97   ACCUCCGUUCUUGAAUAUUUGUCG   120 Target Full Sequence	2.5	TSA: Zea mays contig06812, mRNA sequence	NA	coding protein	psRNATarget
EZ053711.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   ||||=||||*|||||||||||||| targets:103   ACCUUCGUUCUCGAAUAUUUGUCG   126 Target Full Sequence	1.0	TSA: Zea mays contig54833, mRNA sequence	NA	coding protein	psRNATarget
EU949554.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |=|||||||*|||||||||||||| targets:402   AUCUCCGUUUUCGAAUAUUUGUCG   425 Target Full Sequence	1.0	Zea mays clone 424261 mRNA sequence	NA	coding protein	psRNATarget
EZ091447.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*||||||||||||=| targets:67   ACCUCCGUUCUCGAAUAUUUGUUG   90 Target Full Sequence	2.5	TSA: Zea mays contig27095, mRNA sequence	NA	coding protein	psRNATarget
EZ113277.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |=|||||||*|||||||||||||| targets:582   AUCUCCGUUUUCGAAUAUUUGUCG   605 Target Full Sequence	1.0	TSA: Zea mays contig48938, mRNA sequence	NA	coding protein	psRNATarget
AY109049.2	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |=|||||||*|||||||||||||| targets:455   AUCUCCGUUUUCGAAUAUUUGUCG   478 Target Full Sequence	1.0	Zea mays PCO094720 mRNA sequence	NA	coding protein	psRNATarget
BT083888.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   ||||=||||*|||||||||||||| targets:1108   ACCUUCGUUCUCGAAUAUUUGUCG   1131 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0051D08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001177150.2	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   ||||=||||*|||||||||||||| targets:1259   ACCUUCGUUCUCGAAUAUUUGUCG   1282 Target Full Sequence	1.0	Zea mays hypothetical protein (umc1687), mRNA	NA	coding protein	psRNATarget
NM_001148677.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   ||||=||||*|||||||||||||| targets:1276   ACCUUCGUUCUCGAAUAUUUGUCG   1299 Target Full Sequence	1.0	Zea mays hypothetical protein (umc1687), mRNA	NA	coding protein	psRNATarget
BT042757.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   ||||=||||*|||||||||||||| targets:1276   ACCUUCGUUCUCGAAUAUUUGUCG   1299 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0037D18 mRNA, complete cds	NA	coding protein	psRNATarget
BT061281.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   =||||||||*|||||||||||||| targets:1375   GCCUCCGUUCUCGAAUAUUUGUCG   1398 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0131A16 mRNA, complete cds	NA	coding protein	psRNATarget
BT068579.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |=|||||||*|||||||||||||| targets:1444   AUCUCCGUUUUCGAAUAUUUGUCG   1467 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0339J04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175535.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*||||||||||||=| targets:1544   ACCUCCGUUCUCGAAUAUUUGUUG   1567 Target Full Sequence	2.5	Zea mays uncharacterized LOC100382838 (LOC100382838), mRNA	NA	coding protein	psRNATarget
BT065511.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*||||||||||||=| targets:1544   ACCUCCGUUCUCGAAUAUUUGUUG   1567 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0202I04 mRNA, complete cds	NA	coding protein	psRNATarget
BT034355.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |=|||||||*|||||||||||||| targets:1541   AUCUCCGUUUUCGAAUAUUUGUCG   1564 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0007D11 mRNA, complete cds	NA	coding protein	psRNATarget
BT068416.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |=|||||||*|||||||||||||| targets:1608   AUCUCCGUUUUCGAAUAUUUGUCG   1631 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0181F19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001347903.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |=|||||||*|||||||||||||| targets:1608   AUCUCCGUUUUCGAAUAUUUGUCG   1631 Target Full Sequence	1.0	Zea mays Sulfoquinovosyl transferase SQD2 (pco094720a), mRNA	NA	coding protein	psRNATarget
XM_008652607.2	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |=|||||||*|||||||||||||| targets:1652   AUCUCCGUUUUCGAAUAUUUGUCG   1675 Target Full Sequence	1.0	PREDICTED: Zea mays Sulfoquinovosyl transferase SQD2 (pco094720a), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT061377.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |=|||||||*|||||||||||||| targets:1695   AUCUCCGUUUUCGAAUAUUUGUCG   1718 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0140P11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020540634.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*||||||||||||=| targets:1647   ACCUCCGUUCUCGAAUAUUUGUUG   1670 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382838 (LOC100382838), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT087620.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |=|||||||*|||||||||||||| targets:1969   AUCUCCGUUUUCGAAUAUUUGUCG   1992 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0134K18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008665300.2	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   ||||=||||*|||||||||||||| targets:2073   ACCUUCGUUCUCGAAUAUUUGUCG   2096 Target Full Sequence	1.0	PREDICTED: Zea mays trichohyalin-like (LOC103641991), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008665299.2	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   ||||=||||*|||||||||||||| targets:2085   ACCUUCGUUCUCGAAUAUUUGUCG   2108 Target Full Sequence	1.0	PREDICTED: Zea mays trichohyalin-like (LOC103641991), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008665301.2	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   ||||=||||*|||||||||||||| targets:2138   ACCUUCGUUCUCGAAUAUUUGUCG   2161 Target Full Sequence	1.0	PREDICTED: Zea mays trichohyalin-like (LOC103641991), transcript variant X2, mRNA	NA	coding protein	psRNATarget
M73828.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*|||||||||||||* targets:578   ACCUCCGUUUUCGAAUAUUUGUCA   601 Target Full Sequence	2.0	Maize ferredoxin (Fd) isoprotein mRNA, pFD5	NA	coding protein	psRNATarget
EU950207.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |=|||||||*||||||||||||=| targets:36   AUCUCCGUUCUCGAAUAUUUGUUG   59 Target Full Sequence	2.5	Zea mays clone 469419 mRNA sequence	NA	coding protein	psRNATarget
EU965986.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   ==|||||||*|||||||||||||| targets:767   GUCUCCGUUCUCGAAUAUUUGUCG   790 Target Full Sequence	1.0	Zea mays clone 290591 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008654524.2	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   ==|||||||*|||||||||||||| targets:1092   GUCUCCGUUCUCGAAUAUUUGUCG   1115 Target Full Sequence	1.0	PREDICTED: Zea mays transcription factor UPBEAT1 (LOC100276975), mRNA	NA	coding protein	psRNATarget
EU952914.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |=||=||||*|||||||||||||| targets:979   AUCUUCGUUCUCGAAUAUUUGUCG   1002 Target Full Sequence	1.0	Zea mays clone 1357151 mRNA sequence	NA	coding protein	psRNATarget
NM_001352895.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |=||=||||*|||||||||||||| targets:1572   AUCUUCGUUCUCGAAUAUUUGUCG   1595 Target Full Sequence	1.0	Zea mays homeobox-leucine zipper protein HOX23 (LOC103626227), mRNA	NA	coding protein	psRNATarget
EU940941.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   =|||=||||*|||||||||||||| targets:1731   GCCUUCGUUCUCGAAUAUUUGUCG   1754 Target Full Sequence	1.0	Zea mays clone 1218400 mRNA sequence	NA	coding protein	psRNATarget
NM_001153830.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   =|||=||||*|||||||||||||| targets:2158   GCCUUCGUUCUCGAAUAUUUGUCG   2181 Target Full Sequence	1.0	Zea mays regulatory subunit (LOC100280910), mRNA	NA	coding protein	psRNATarget
EU954561.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   =|||=||||*|||||||||||||| targets:2158   GCCUUCGUUCUCGAAUAUUUGUCG   2181 Target Full Sequence	1.0	Zea mays clone 1470172 regulatory subunit mRNA, complete cds	NA	coding protein	psRNATarget
XM_008645362.2	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   =|||=||||*|||||||||||||| targets:2229   GCCUUCGUUCUCGAAUAUUUGUCG   2252 Target Full Sequence	1.0	PREDICTED: Zea mays regulatory subunit (LOC100280910), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645361.2	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   =|||=||||*|||||||||||||| targets:2247   GCCUUCGUUCUCGAAUAUUUGUCG   2270 Target Full Sequence	1.0	PREDICTED: Zea mays regulatory subunit (LOC100280910), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ084539.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*||*||||||||||| targets:21   ACCUCCGUUCUCAAAUAUUUGUCG   44 Target Full Sequence	2.5	TSA: Zea mays contig20183, mRNA sequence	NA	coding protein	psRNATarget
EZ113291.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   ||||||*||*|||||||||||||| targets:86   ACCUCCCUUCUCGAAUAUUUGUCG   109 Target Full Sequence	2.0	TSA: Zea mays contig48952, mRNA sequence	NA	coding protein	psRNATarget
LQ242205.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*||||||||||*||| targets:188   ACCUCCGUUCUCGAAUAUUUAUCG   211 Target Full Sequence	2.5	Sequence 8200 from Patent EP2985353	NA	coding protein	psRNATarget
JB170374.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*||||||||||*||| targets:188   ACCUCCGUUCUCGAAUAUUUAUCG   211 Target Full Sequence	2.5	Sequence 8038 from Patent EP2559767	NA	coding protein	psRNATarget
HI409913.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*||||||||||*||| targets:188   ACCUCCGUUCUCGAAUAUUUAUCG   211 Target Full Sequence	2.5	Sequence 8038 from Patent EP2074227	NA	coding protein	psRNATarget
JB170536.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*||||||||||*||| targets:188   ACCUCCGUUCUCGAAUAUUUAUCG   211 Target Full Sequence	2.5	Sequence 8200 from Patent EP2559767	NA	coding protein	psRNATarget
HI410075.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*||||||||||*||| targets:188   ACCUCCGUUCUCGAAUAUUUAUCG   211 Target Full Sequence	2.5	Sequence 8200 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242043.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*||||||||||*||| targets:188   ACCUCCGUUCUCGAAUAUUUAUCG   211 Target Full Sequence	2.5	Sequence 8038 from Patent EP2985353	NA	coding protein	psRNATarget
EU945472.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*|||||||||||*|| targets:433   ACCUCCGUUCUCGAAUAUUUGCCG   456 Target Full Sequence	2.5	Zea mays clone 274397 mRNA sequence	NA	coding protein	psRNATarget
XM_020537813.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*||||||||||*||| targets:869   ACCUCCGUUCUCGAAUAUUUAUCG   892 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103625705 (LOC103625705), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020537812.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*||||||||||*||| targets:923   ACCUCCGUUCUCGAAUAUUUAUCG   946 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103625705 (LOC103625705), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020537811.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*||||||||||*||| targets:975   ACCUCCGUUCUCGAAUAUUUAUCG   998 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103625705 (LOC103625705), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001151933.2	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   ||*||||||*|||||||||||||| targets:97   ACAUCCGUUCUCGAAUAUUUGUCG   120 Target Full Sequence	1.0	Zea mays uncharacterized LOC100278762 (LOC100278762), mRNA	NA	coding protein	psRNATarget
EU962019.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*||||||||||*||| targets:1023   ACCUCCGUUCUCGAAUAUUUAUCG   1046 Target Full Sequence	2.5	Zea mays clone 239644 mRNA sequence	NA	coding protein	psRNATarget
XM_020537810.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*||||||||||*||| targets:1028   ACCUCCGUUCUCGAAUAUUUAUCG   1051 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103625705 (LOC103625705), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU975204.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   ||*||||||*|||||||||||||| targets:97   ACAUCCGUUCUCGAAUAUUUGUCG   120 Target Full Sequence	1.0	Zea mays clone 484326 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT062803.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||*|||||*|||||||||||||| targets:1342   ACCGCCGUUUUCGAAUAUUUGUCG   1365 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0348F04 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008647986.2	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   ==|||=|||*|||||||||||||| targets:1417   GUCUCUGUUCUCGAAUAUUUGUCG   1440 Target Full Sequence	2.0	PREDICTED: Zea mays putative disease resistance RPP13-like protein 3 (LOC103627692), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU960779.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*|||||||||||*|| targets:1310   ACCUCCGUUCUCGAAUAUUUGCCG   1333 Target Full Sequence	2.5	Zea mays clone 228509 mRNA sequence	NA	coding protein	psRNATarget
BT042256.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   ||*||||||*|||||||||||||| targets:849   ACAUCCGUUCUCGAAUAUUUGUCG   872 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0181G14 mRNA, complete cds	NA	coding protein	psRNATarget
EU970373.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||*|||||*|||||||||||||| targets:1406   ACCGCCGUUUUCGAAUAUUUGUCG   1429 Target Full Sequence	1.0	Zea mays clone 343882 DNA polymerase III subunit epsilon mRNA, complete cds	NA	coding protein	psRNATarget
BT060531.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*||*||||||||||| targets:415   ACCUCCGUUCUCAAAUAUUUGUCG   438 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0012H17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008680066.2	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||*|||||*|||||||||||||| targets:1442   ACCGCCGUUUUCGAAUAUUUGUCG   1465 Target Full Sequence	1.0	PREDICTED: Zea mays Exonuclease DPD1 chloroplastic/mitochondrial (cl8740_1a), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT034540.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||*|||||*|||||||||||||| targets:1818   ACCGCCGUUUUCGAAUAUUUGUCG   1841 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0182J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137752.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||*|||||*|||||||||||||| targets:1818   ACCGCCGUUUUCGAAUAUUUGUCG   1841 Target Full Sequence	1.0	Zea mays Exonuclease DPD1 chloroplastic/mitochondrial (cl8740_1a), mRNA	NA	coding protein	psRNATarget
BT018841.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||*|||||*|||||||||||||| targets:1858   ACCGCCGUUUUCGAAUAUUUGUCG   1881 Target Full Sequence	1.0	Zea mays clone EL01N0553C01.d mRNA sequence	NA	coding protein	psRNATarget
AY104299.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*||*||||||||||| targets:1271   ACCUCCGUUCUCAAAUAUUUGUCG   1294 Target Full Sequence	2.5	Zea mays PCO075569 mRNA sequence	NA	coding protein	psRNATarget
BT067485.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||*|||||*|||||||||||||| targets:1921   ACCGCCGUUUUCGAAUAUUUGUCG   1944 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0060C20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008680118.2	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||*|||||*|||||||||||||| targets:2043   ACCGCCGUUUUCGAAUAUUUGUCG   2066 Target Full Sequence	1.0	PREDICTED: Zea mays Exonuclease DPD1 chloroplastic/mitochondrial (cl8740_1a), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008680166.2	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||*|||||*|||||||||||||| targets:2070   ACCGCCGUUUUCGAAUAUUUGUCG   2093 Target Full Sequence	1.0	PREDICTED: Zea mays Exonuclease DPD1 chloroplastic/mitochondrial (cl8740_1a), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008680206.2	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||*|||||*|||||||||||||| targets:2111   ACCGCCGUUUUCGAAUAUUUGUCG   2134 Target Full Sequence	1.0	PREDICTED: Zea mays Exonuclease DPD1 chloroplastic/mitochondrial (cl8740_1a), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020546478.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||*|||||*|||||||||||||| targets:2922   ACCCCCGUUCUCGAAUAUUUGUCG   2945 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100194233 (LOC100194233), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546479.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||*|||||*|||||||||||||| targets:2922   ACCCCCGUUCUCGAAUAUUUGUCG   2945 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100194233 (LOC100194233), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020545142.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||||||*||||||||||||*| targets:386   ACCUCCGUUCUCGAAUAUUUGUAG   409 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382526 (LOC100382526), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EZ049723.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   ||*|=||||*|||||||||||||| targets:51   ACAUUCGUUCUCGAAUAUUUGUCG   74 Target Full Sequence	1.0	TSA: Zea mays contig50841, mRNA sequence	NA	coding protein	psRNATarget
EZ054003.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |*|||=|||*|||||||||||||| targets:94   AACUCUGUUCUCGAAUAUUUGUCG   117 Target Full Sequence	2.0	TSA: Zea mays contig55125, mRNA sequence	NA	coding protein	psRNATarget
EU966414.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   ||=|||*||*|||||||||||||| targets:801   ACUUCCCUUCUCGAAUAUUUGUCG   824 Target Full Sequence	2.0	Zea mays clone 294304 SWIb domain-containing protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156819.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   ||=|||*||*|||||||||||||| targets:801   ACUUCCCUUCUCGAAUAUUUGUCG   824 Target Full Sequence	2.0	Zea mays SWIB/MDM2 domain superfamily protein (pco097858), mRNA	NA	coding protein	psRNATarget
EU968574.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |*=||||||*|||||||||||||| targets:927   AGUUCCGUUCUCGAAUAUUUGUCG   950 Target Full Sequence	1.0	Zea mays clone 322400 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143322.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |*=||||||*|||||||||||||| targets:1035   AGUUCCGUUCUCGAAUAUUUGUCG   1058 Target Full Sequence	1.0	Zea mays uncharacterized LOC100216939 (LOC100216939), mRNA	NA	coding protein	psRNATarget
BT037645.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |*=||||||*|||||||||||||| targets:1035   AGUUCCGUUCUCGAAUAUUUGUCG   1058 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0185K20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008676285.2	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||||=*||*|||||||||||||| targets:1014   ACCUCUAUUUUCGAAUAUUUGUCG   1037 Target Full Sequence	3.0	PREDICTED: Zea mays transcription factor bHLH100-like (LOC103650720), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT060610.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||*|||||*|=|||||||||||| targets:1331   ACCGCCGUUCUUGAAUAUUUGUCG   1354 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0024C16 mRNA, complete cds	NA	coding protein	psRNATarget
BT066449.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   =||||||||*|||||||||||*|| targets:1294   GCCUCCGUUCUCGAAUAUUUGCCG   1317 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0165H16 mRNA, complete cds	NA	coding protein	psRNATarget
BT039562.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   =||||||||*|||||||||||*|| targets:1225   GCCUCCGUUCUCGAAUAUUUGCCG   1248 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0030F21 mRNA, complete cds	NA	coding protein	psRNATarget
EU940900.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   ||||=||||*|||||||*|||||| targets:1239   ACCUUCGUUCUCGAAUAAUUGUCG   1262 Target Full Sequence	2.5	Zea mays clone 1168188 mRNA sequence	NA	coding protein	psRNATarget
NM_001137865.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   =||||||||*|||||||||||*|| targets:1286   GCCUCCGUUCUCGAAUAUUUGCCG   1309 Target Full Sequence	2.5	Zea mays hypothetical protein (cl9642_1(176)), mRNA	NA	coding protein	psRNATarget
BT034692.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   =||||||||*|||||||||||*|| targets:1286   GCCUCCGUUCUCGAAUAUUUGCCG   1309 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0011N11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008666912.2	ncRNA:24   UG---GAGGCAACAGCUUAUAAACAGC   1   ||---|||||||*||||||||||||=| targets:1758   ACUGACUCCGUUCUCGAAUAUUUGUUG   1784 Target Full Sequence	2.5	PREDICTED: Zea mays LOB domain-containing protein 36 (LOC103643737), mRNA	NA	coding protein	psRNATarget
EU970775.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   ||=*|||||*|||||||||||||| targets:2253   ACUCCCGUUCUCGAAUAUUUGUCG   2276 Target Full Sequence	1.0	Zea mays clone 350572 zeaxanthin epoxidase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157971.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   ||=*|||||*|||||||||||||| targets:2253   ACUCCCGUUCUCGAAUAUUUGUCG   2276 Target Full Sequence	1.0	Zea mays zeaxanthin epoxidase (LOC100285076), mRNA	NA	coding protein	psRNATarget
XM_020545884.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   ||=||||||*||||||||||*||| targets:3512   ACUUCCGUUCUCGAAUAUUUAUCG   3535 Target Full Sequence	2.5	PREDICTED: Zea mays E3 ubiquitin-protein ligase PUB23 (LOC103642284), mRNA	NA	coding protein	psRNATarget
XM_020538407.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||*|||||*|=|||||||||||| targets:5895   ACCGCCGUUCUUGAAUAUUUGUCG   5918 Target Full Sequence	2.5	PREDICTED: Zea mays lysine-specific demethylase 5B (LOC103626493), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008646910.2	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||*|||||*|=|||||||||||| targets:5918   ACCGCCGUUCUUGAAUAUUUGUCG   5941 Target Full Sequence	2.5	PREDICTED: Zea mays lysine-specific demethylase 5B (LOC103626493), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008675718.2	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |*|||||||*|||||||||||||* targets:1130   AACUCCGUUAUCGAAUAUUUGUCA   1153 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103650050 (LOC103650050), mRNA	NA	coding protein	psRNATarget
EU968685.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |=||=||||*||||||||||||*| targets:438   AUCUUCGUUCUCGAAUAUUUGUGG   461 Target Full Sequence	2.5	Zea mays clone 323448 h/ACA ribonucleoprotein complex subunit 3-like protein mRNA, complete cds	NA	coding protein	psRNATarget
EU963041.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |=||=||||*||||||||||||*| targets:426   AUCUUCGUUCUCGAAUAUUUGUGG   449 Target Full Sequence	2.5	Zea mays clone 256747 h/ACA ribonucleoprotein complex subunit 3-like protein mRNA, complete cds	NA	coding protein	psRNATarget
AY110930.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   =**||||||*|||||||||||||| targets:198   GAAUCCGUUAUCGAAUAUUUGUCG   221 Target Full Sequence	1.0	Zea mays CL27955_1 mRNA sequence	NA	coding protein	psRNATarget
NM_001157392.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |=||=||||*||||||||||||*| targets:1248   AUCUUCGUUCUCGAAUAUUUGUGG   1271 Target Full Sequence	2.5	Zea mays h/ACA ribonucleoprotein complex subunit 3-like protein (LOC100284497), mRNA	NA	coding protein	psRNATarget
EU968577.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |=||=||||*||||||||||||*| targets:1248   AUCUUCGUUCUCGAAUAUUUGUGG   1271 Target Full Sequence	2.5	Zea mays clone 322423 h/ACA ribonucleoprotein complex subunit 3-like protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ077311.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |||*|||||*|||||||||||*|| targets:115   ACCCCCGUUCUCGAAUAUUUGCCG   138 Target Full Sequence	2.5	TSA: Zea mays contig12948, mRNA sequence	NA	coding protein	psRNATarget
NM_001151165.2	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   =||-|||||*||||||=||||||| targets:860   GCC-CCGUUCUCGAAUGUUUGUCG   882 Target Full Sequence	2.5	Zea mays uncharacterized LOC100277656 (LOC100277656), mRNA	NA	coding protein	psRNATarget
EU969811.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   =||-|||||*||||||=||||||| targets:1170   GCC-CCGUUCUCGAAUGUUUGUCG   1192 Target Full Sequence	2.5	Zea mays clone 335974 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT055687.2	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |*|||||||*||*||||||||||| targets:91   AACUCCGUUCUCAAAUAUUUGUCG   114 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0118D04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148466.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   =**||||||*|||||||||||||* targets:2334   GAAUCCGUUCUCGAAUAUUUGUCC   2357 Target Full Sequence	2.0	Zea mays RecQ-mediated genome instability protein 1 (LOC100274087), mRNA	NA	coding protein	psRNATarget
BT042334.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   =**||||||*|||||||||||||* targets:2334   GAAUCCGUUCUCGAAUAUUUGUCC   2357 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0204G22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669356.2	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   =**||||||*|||||||||||||* targets:2532   GAAUCCGUUCUCGAAUAUUUGUCC   2555 Target Full Sequence	2.0	PREDICTED: Zea mays RecQ-mediated genome instability protein 1 (LOC100274087), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ053485.1	ncRNA:24   UGGAGGCAACAGCUUAUAAACAGC   1   |*||=||||*||*||||||||||| targets:154   AACUUCGUUCUCAAAUAUUUGUCG   177 Target Full Sequence	2.5	TSA: Zea mays contig54607, mRNA sequence	NA	coding protein	psRNATarget
AY110588.1	ncRNA:24   UGG-AGGCAACAGCUUAUAAACAGC   1   *||-||||||*||||||||||||*| targets:149   UCCGUCCGUUCUCGAAUAUUUGUAG   173 Target Full Sequence	2.5	Zea mays CL8418_1 mRNA sequence	NA	coding protein	psRNATarget