Search result

BaseInfo

ncRNA ID	novel_zma_miR3821
Species	Zea mays
Class	miRNA
Genome position	Chr4:457745-457838 [-]
Reference genome	RefGen_v4
Source	SRR2287159
Length	24
Mature sequence(if miRNA)	1 - AAAGAAACGGAGGGAGUAUAAUAA - 24
Stem-loop(if miRNA)	--CA                 G                     G  A     UAUACUCCCUCCGUUUC UUUUAGUUGUCGCUGGAUAGU CA A     ||||||||||||||||| ||||||||||||||||||||| ||     AUAUGAGGGAGGCAAAG AAAAUCAACAGCGACCUAUCA GU A AAUA                 A                     A  U
Stem-loop sequence	CAUAUACUCCCUCCGUUUCGUUUUAGUUGUCGCUGGAUAGUGCAAAAUUGAACUAUCCAGCGACAACUAAAAAGAAACGGAGGGAGUAUAAUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ061772.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   **|||||||||||||||||||||| targets:178   AGAUUAUACUCCCUCCGUUUCUUU   201 Target Full Sequence	0.0	TSA: Zea mays contig62894, mRNA sequence	NA	coding protein	psRNATarget
EU974849.1	ncRNA:24   AAUAAU--AUGAGGGAGGCAAAGAAA   1   ||=|||--|||||||||||||||||| targets:561   UUGUUAAGUACUCCCUCCGUUUCUUU   586 Target Full Sequence	2.5	Zea mays clone 459794 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151882.1	ncRNA:24   AAUAAU--AUGAGGGAGGCAAAGAAA   1   ||=|||--|||||||||||||||||| targets:561   UUGUUAAGUACUCCCUCCGUUUCUUU   586 Target Full Sequence	2.5	Zea mays uncharacterized LOC100278686 (LOC100278686), mRNA	NA	coding protein	psRNATarget
EU964901.1	ncRNA:24   AAUAAU--AUGAGGGAGGCAAAGAAA   1   ||=|||--|||||||||||||||||| targets:489   UUGUUAAGUACUCCCUCCGUUUCUUU   514 Target Full Sequence	2.5	Zea mays clone 282450 mRNA sequence	NA	coding protein	psRNATarget
XM_020546693.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   ||||-||||||||||||||||||| targets:2138   UUAU-AUACUCCCUCCGUUUCUUU   2160 Target Full Sequence	0.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_020546692.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   ||||-||||||||||||||||||| targets:2200   UUAU-AUACUCCCUCCGUUUCUUU   2222 Target Full Sequence	0.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020546684.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   ||||-||||||||||||||||||| targets:2239   UUAU-AUACUCCCUCCGUUUCUUU   2261 Target Full Sequence	0.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546683.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   ||||-||||||||||||||||||| targets:2214   UUAU-AUACUCCCUCCGUUUCUUU   2236 Target Full Sequence	0.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546689.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   ||||-||||||||||||||||||| targets:2159   UUAU-AUACUCCCUCCGUUUCUUU   2181 Target Full Sequence	0.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020546691.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   ||||-||||||||||||||||||| targets:2200   UUAU-AUACUCCCUCCGUUUCUUU   2222 Target Full Sequence	0.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020546686.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   ||||-||||||||||||||||||| targets:2221   UUAU-AUACUCCCUCCGUUUCUUU   2243 Target Full Sequence	0.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020546687.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   ||||-||||||||||||||||||| targets:2221   UUAU-AUACUCCCUCCGUUUCUUU   2243 Target Full Sequence	0.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020546685.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   ||||-||||||||||||||||||| targets:2221   UUAU-AUACUCCCUCCGUUUCUUU   2243 Target Full Sequence	0.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546694.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   ||||-||||||||||||||||||| targets:2200   UUAU-AUACUCCCUCCGUUUCUUU   2222 Target Full Sequence	0.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_008666445.2	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   ||||-||||||||||||||||||| targets:2200   UUAU-AUACUCCCUCCGUUUCUUU   2222 Target Full Sequence	0.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X14, mRNA	NA	coding protein	psRNATarget
XM_020546695.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   ||||-||||||||||||||||||| targets:2200   UUAU-AUACUCCCUCCGUUUCUUU   2222 Target Full Sequence	0.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X13, mRNA	NA	coding protein	psRNATarget
XM_020546173.1	ncRNA:24   AAUA-AUAUGAGGGAGGCAAAGAAA   1   *|||-|||||||||||||||||||| targets:1456   AUAUAUAUACUCCCUCCGUUUCUUU   1480 Target Full Sequence	0.0	PREDICTED: Zea mays myb-related protein P-like (LOC109943268), mRNA	NA	coding protein	psRNATarget
XM_008669400.2	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   **=||||||||||||||||||||| targets:1594   CAGUUAUACUCCCUCCGUUUCUUU   1617 Target Full Sequence	0.0	PREDICTED: Zea mays Pentatricopeptide repeat-containing protein PNM1 mitochondrial (LOC100274849), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020537567.1	ncRNA:24   AAU-AAUA-UGAGGGAGGCAAAGAAA   1   |||-||||-||||||||||||||||| targets:1444   UUAGUUAUUACUCCCUCCGUUUCUUU   1469 Target Full Sequence	2.0	PREDICTED: Zea mays MADS2 (zmm2), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU973473.1	ncRNA:24   AAUA-----AUAUGAGGGAGGCAAAGAAA   1   ||||-----|=|||||||||||||||||| targets:638   UUAUAAACUUGUACUCCCUCCGUUUCUUU   666 Target Full Sequence	1.0	Zea mays clone 399411 mRNA sequence	NA	coding protein	psRNATarget
HI403279.1	ncRNA:24   AAU-AAU-AUGAGGGAGGCAAAGAAA   1   |||-|||-|||||||||||||||||| targets:3   UUAAUUAGUACUCCCUCCGUUUCUUU   28 Target Full Sequence	2.0	Sequence 1404 from Patent EP2074227	NA	coding protein	psRNATarget
JB163740.1	ncRNA:24   AAU-AAU-AUGAGGGAGGCAAAGAAA   1   |||-|||-|||||||||||||||||| targets:3   UUAAUUAGUACUCCCUCCGUUUCUUU   28 Target Full Sequence	2.0	Sequence 1404 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235409.1	ncRNA:24   AAU-AAU-AUGAGGGAGGCAAAGAAA   1   |||-|||-|||||||||||||||||| targets:3   UUAAUUAGUACUCCCUCCGUUUCUUU   28 Target Full Sequence	2.0	Sequence 1404 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235499.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   ***||||||||||||||||||||| targets:5   AACUUAUACUCCCUCCGUUUCUUU   28 Target Full Sequence	0.0	Sequence 1494 from Patent EP2985353	NA	coding protein	psRNATarget
JB163830.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   ***||||||||||||||||||||| targets:5   AACUUAUACUCCCUCCGUUUCUUU   28 Target Full Sequence	0.0	Sequence 1494 from Patent EP2559767	NA	coding protein	psRNATarget
HI403369.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   ***||||||||||||||||||||| targets:5   AACUUAUACUCCCUCCGUUUCUUU   28 Target Full Sequence	0.0	Sequence 1494 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020547478.1	ncRNA:24   AAU-AAUAUGAGGGAGGCAAAGAAA   1   |||-|||||||||*||||||||||| targets:3174   UUACUUAUACUCCAUCCGUUUCUUU   3198 Target Full Sequence	1.5	PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547479.1	ncRNA:24   AAU-AAUAUGAGGGAGGCAAAGAAA   1   |||-|||||||||*||||||||||| targets:3174   UUACUUAUACUCCAUCCGUUUCUUU   3198 Target Full Sequence	1.5	PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008669138.2	ncRNA:24   AAU-AAUAUGAGGGAGGCAAAGAAA   1   |||-|||||||||*||||||||||| targets:2796   UUACUUAUACUCCAUCCGUUUCUUU   2820 Target Full Sequence	1.5	PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008669142.2	ncRNA:24   AAU-AAUAUGAGGGAGGCAAAGAAA   1   |||-|||||||||*||||||||||| targets:2664   UUACUUAUACUCCAUCCGUUUCUUU   2688 Target Full Sequence	1.5	PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008669143.2	ncRNA:24   AAU-AAUAUGAGGGAGGCAAAGAAA   1   |||-|||||||||*||||||||||| targets:2734   UUACUUAUACUCCAUCCGUUUCUUU   2758 Target Full Sequence	1.5	PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X7, mRNA	NA	coding protein	psRNATarget
EU957018.1	ncRNA:24   AAUA--AUAUGAGGGAGGCAAAGAAA   1   *|||--|||||||||||=|||||||| targets:1992   AUAUAAUAUACUCCCUCUGUUUCUUU   2017 Target Full Sequence	1.5	Zea mays clone 1580670 cytochrome P450 CYP84A33v2 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674191.2	ncRNA:24   AAUAA--UAUGAGGGAGGCAAAGAAA   1   *|=||--||||||||||||||||||| targets:1143   AUGUUGGAUACUCCCUCCGUUUCUUU   1168 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein S-acyltransferase 16 (LOC100273154), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647346.2	ncRNA:24   AAUAAU-AUGAGGGAGGCAAAGAAA   1   |*||||-|||||||||||||||||| targets:134   UAAUUAAUACUCCCUCCGUUUCUUU   158 Target Full Sequence	2.0	PREDICTED: Zea mays E3 ubiquitin-protein ligase Os03g0188200 (LOC103626988), mRNA	NA	coding protein	psRNATarget
HI403399.1	ncRNA:24   AAUAA-UAUGAGGGAGGCAAAGAAA   1   **|||-||||||||||||||||||| targets:4   AGAUUCAUACUCCCUCCGUUUCUUU   28 Target Full Sequence	2.0	Sequence 1524 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235529.1	ncRNA:24   AAUAA-UAUGAGGGAGGCAAAGAAA   1   **|||-||||||||||||||||||| targets:4   AGAUUCAUACUCCCUCCGUUUCUUU   28 Target Full Sequence	2.0	Sequence 1524 from Patent EP2985353	NA	coding protein	psRNATarget
JB163860.1	ncRNA:24   AAUAA-UAUGAGGGAGGCAAAGAAA   1   **|||-||||||||||||||||||| targets:4   AGAUUCAUACUCCCUCCGUUUCUUU   28 Target Full Sequence	2.0	Sequence 1524 from Patent EP2559767	NA	coding protein	psRNATarget
HI407270.1	ncRNA:23   AUAAUAUGAGGGAGGCAAAGAAA   1   **||=|||||||||||||||||| targets:1   AUUUGUACUCCCUCCGUUUCUUU   23 Target Full Sequence	1.0	Sequence 5395 from Patent EP2074227	NA	coding protein	psRNATarget
JB167731.1	ncRNA:23   AUAAUAUGAGGGAGGCAAAGAAA   1   **||=|||||||||||||||||| targets:1   AUUUGUACUCCCUCCGUUUCUUU   23 Target Full Sequence	1.0	Sequence 5395 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239400.1	ncRNA:23   AUAAUAUGAGGGAGGCAAAGAAA   1   **||=|||||||||||||||||| targets:1   AUUUGUACUCCCUCCGUUUCUUU   23 Target Full Sequence	1.0	Sequence 5395 from Patent EP2985353	NA	coding protein	psRNATarget
BT035546.1	ncRNA:24   AAUA-AUAUGAGGGAGGCAAAG-AAA   1   *|||-|||||||||||||||||-||| targets:905   GUAUAUAUACUCCCUCCGUUUCGUUU   930 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0068P01 mRNA, complete cds	NA	coding protein	psRNATarget
EU968044.1	ncRNA:24   AAUA-AUAUGAGGGAGGCAAAG-AAA   1   *|||-|||||||||||||||||-||| targets:1017   GUAUAUAUACUCCCUCCGUUUCGUUU   1042 Target Full Sequence	3.0	Zea mays clone 313382 adenylyl-sulfate kinase 1 mRNA, complete cds	NA	coding protein	psRNATarget
HI403287.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   **||*||||||||||||||||||| targets:5   AAAUGAUACUCCCUCCGUUUCUUU   28 Target Full Sequence	0.0	Sequence 1412 from Patent EP2074227	NA	coding protein	psRNATarget
JB163748.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   **||*||||||||||||||||||| targets:5   AAAUGAUACUCCCUCCGUUUCUUU   28 Target Full Sequence	0.0	Sequence 1412 from Patent EP2559767	NA	coding protein	psRNATarget
JB163817.1	ncRNA:24   AAUAA-UAUGAGGGAGGCAAAGAAA   1   ||*||-=|||||||||||||||||| targets:4   UUCUUCGUACUCCCUCCGUUUCUUU   28 Target Full Sequence	3.0	Sequence 1481 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235486.1	ncRNA:24   AAUAA-UAUGAGGGAGGCAAAGAAA   1   ||*||-=|||||||||||||||||| targets:4   UUCUUCGUACUCCCUCCGUUUCUUU   28 Target Full Sequence	3.0	Sequence 1481 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235417.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   **||*||||||||||||||||||| targets:5   AAAUGAUACUCCCUCCGUUUCUUU   28 Target Full Sequence	0.0	Sequence 1412 from Patent EP2985353	NA	coding protein	psRNATarget
HI403356.1	ncRNA:24   AAUAA-UAUGAGGGAGGCAAAGAAA   1   ||*||-=|||||||||||||||||| targets:4   UUCUUCGUACUCCCUCCGUUUCUUU   28 Target Full Sequence	3.0	Sequence 1481 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008664460.2	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   *|||*=|||||||||=|||||||| targets:107   AUAUAGUACUCCCUCUGUUUCUUU   130 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103641061), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT024153.1	ncRNA:24   AAUAAU--AUGAGGGAGGCAAAGAAA   1   ||=|*|--|||||||||||||||||| targets:182   UUGUCACGUACUCCCUCCGUUUCUUU   207 Target Full Sequence	2.5	Zea mays clone EL01N0438E01 mRNA sequence	NA	coding protein	psRNATarget
XM_008664463.2	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   *|||*=|||||||||=|||||||| targets:87   AUAUAGUACUCCCUCUGUUUCUUU   110 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103641061), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EZ517015.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   *|||*=||||||||||||||=||| targets:50   AUAUGGUACUCCCUCCGUUUUUUU   73 Target Full Sequence	2.5	TSA: Zea mays cultivar W22 CL412Contig1.betc, mRNA sequence	NA	coding protein	psRNATarget
XM_008651543.2	ncRNA:24   AAUA---------AUAUGAGGGAGGCAAAGAAA   1   ||=|---------||||||=||||||||||||| targets:2481   UUGUCAUAAAACAUAUACUUCCUCCGUUUCUUU   2513 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008651544.2	ncRNA:24   AAUA---------AUAUGAGGGAGGCAAAGAAA   1   ||=|---------||||||=||||||||||||| targets:1340   UUGUCAUAAAACAUAUACUUCCUCCGUUUCUUU   1372 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001156655.1	ncRNA:24   AAUA---AU-AUGAGGGAGGCAAAGAAA   1   *|||---||-|||||||||||||||||| targets:1278   AUAUCUCUAAUACUCCCUCCGUUUCUUU   1305 Target Full Sequence	2.0	Zea mays wax synthase (LOC100283756), mRNA	NA	coding protein	psRNATarget
EU965844.1	ncRNA:24   AAUA---AU-AUGAGGGAGGCAAAGAAA   1   *|||---||-|||||||||||||||||| targets:1278   AUAUCUCUAAUACUCCCUCCGUUUCUUU   1305 Target Full Sequence	2.0	Zea mays clone 289333 wax synthase isoform 3 mRNA, complete cds	NA	coding protein	psRNATarget
HI403401.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   ||=|**|||||||||||||||||| targets:5   UUGUAUUACUCCCUCCGUUUCUUU   28 Target Full Sequence	1.0	Sequence 1526 from Patent EP2074227	NA	coding protein	psRNATarget
JB163862.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   ||=|**|||||||||||||||||| targets:5   UUGUAUUACUCCCUCCGUUUCUUU   28 Target Full Sequence	1.0	Sequence 1526 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235531.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   ||=|**|||||||||||||||||| targets:5   UUGUAUUACUCCCUCCGUUUCUUU   28 Target Full Sequence	1.0	Sequence 1526 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008658752.2	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   *|||**|||||||||||||||||| targets:2038   AUAUACUACUCCCUCCGUUUCUUU   2061 Target Full Sequence	1.0	PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542418.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   *|||**|||||||||||||||||| targets:1971   AUAUACUACUCCCUCCGUUUCUUU   1994 Target Full Sequence	1.0	PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT054612.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   *|=|*=||||||=||||||||||| targets:1358   CUGUAGUACUCCUUCCGUUUCUUU   1381 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0190P19 mRNA, complete cds	NA	coding protein	psRNATarget
HI408710.1	ncRNA:21   AAUAUGAGGGAGGCAAAGAAA   1   *|=|||||||||||||||||| targets:1   AUGUACUCCCUCCGUUUCUUU   21 Target Full Sequence	1.0	Sequence 6835 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242326.1	ncRNA:21   AAUAUGAGGGAGGCAAAGAAA   1   *|=|||||||||||||||||| targets:1   AUGUACUCCCUCCGUUUCUUU   21 Target Full Sequence	1.0	Sequence 8321 from Patent EP2985353	NA	coding protein	psRNATarget
JB170657.1	ncRNA:21   AAUAUGAGGGAGGCAAAGAAA   1   *|=|||||||||||||||||| targets:1   AUGUACUCCCUCCGUUUCUUU   21 Target Full Sequence	1.0	Sequence 8321 from Patent EP2559767	NA	coding protein	psRNATarget
JB169171.1	ncRNA:21   AAUAUGAGGGAGGCAAAGAAA   1   *|=|||||||||||||||||| targets:1   AUGUACUCCCUCCGUUUCUUU   21 Target Full Sequence	1.0	Sequence 6835 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240840.1	ncRNA:21   AAUAUGAGGGAGGCAAAGAAA   1   *|=|||||||||||||||||| targets:1   AUGUACUCCCUCCGUUUCUUU   21 Target Full Sequence	1.0	Sequence 6835 from Patent EP2985353	NA	coding protein	psRNATarget
HI410196.1	ncRNA:21   AAUAUGAGGGAGGCAAAGAAA   1   *|=|||||||||||||||||| targets:1   AUGUACUCCCUCCGUUUCUUU   21 Target Full Sequence	1.0	Sequence 8321 from Patent EP2074227	NA	coding protein	psRNATarget
HI407305.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAG-AAA   1   *|||-||||||||||||||||-||| targets:1   AUAU-AUACUCCCUCCGUUUCGUUU   24 Target Full Sequence	3.0	Sequence 5430 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239435.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAG-AAA   1   *|||-||||||||||||||||-||| targets:1   AUAU-AUACUCCCUCCGUUUCGUUU   24 Target Full Sequence	3.0	Sequence 5430 from Patent EP2985353	NA	coding protein	psRNATarget
JB167766.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAG-AAA   1   *|||-||||||||||||||||-||| targets:1   AUAU-AUACUCCCUCCGUUUCGUUU   24 Target Full Sequence	3.0	Sequence 5430 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020553339.1	ncRNA:24   AAUA----AU-AUGAGGGAGGCAAAGAAA   1   *|=|----||-|||||||||||||||||| targets:2131   AUGUACGCUACUACUCCCUCCGUUUCUUU   2159 Target Full Sequence	2.0	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020553327.1	ncRNA:24   AAUA----AU-AUGAGGGAGGCAAAGAAA   1   *|=|----||-|||||||||||||||||| targets:2100   AUGUACGCUACUACUCCCUCCGUUUCUUU   2128 Target Full Sequence	2.0	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553342.1	ncRNA:24   AAUA----AU-AUGAGGGAGGCAAAGAAA   1   *|=|----||-|||||||||||||||||| targets:2018   AUGUACGCUACUACUCCCUCCGUUUCUUU   2046 Target Full Sequence	2.0	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020553332.1	ncRNA:24   AAUA----AU-AUGAGGGAGGCAAAGAAA   1   *|=|----||-|||||||||||||||||| targets:1987   AUGUACGCUACUACUCCCUCCGUUUCUUU   2015 Target Full Sequence	2.0	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X4, mRNA	NA	coding protein	psRNATarget
NM_001148943.2	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   |*|**||||||||||||||||||| targets:1537   UGAAGAUACUCCCUCCGUUUCUUU   1560 Target Full Sequence	0.0	Zea mays uncharacterized LOC100274590 (LOC100274590), mRNA	NA	coding protein	psRNATarget
XM_008682282.2	ncRNA:24   AAUA----AU-AUGAGGGAGGCAAAGAAA   1   *|=|----||-|||||||||||||||||| targets:1398   AUGUACGCUACUACUCCCUCCGUUUCUUU   1426 Target Full Sequence	2.0	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU970288.1	ncRNA:24   AAUA---AUAUGAGGGAGGCAAAGAAA   1   **||---|=||||||||=||||||||| targets:1322   CCAUGCAUGUACUCCCUUCGUUUCUUU   1348 Target Full Sequence	2.5	Zea mays clone 343094 metal tolerance protein C3 mRNA, complete cds	NA	coding protein	psRNATarget
EU973763.1	ncRNA:24   AAUA----AU-AUGAGGGAGGCAAAGAAA   1   *|=|----||-|||||||||||||||||| targets:1292   AUGUACGCUACUACUCCCUCCGUUUCUUU   1320 Target Full Sequence	2.0	Zea mays clone 409560 F-box domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158647.2	ncRNA:24   AAUA----AU-AUGAGGGAGGCAAAGAAA   1   *|=|----||-|||||||||||||||||| targets:1290   AUGUACGCUACUACUCCCUCCGUUUCUUU   1318 Target Full Sequence	2.0	Zea mays F-box domain containing protein (LOC100285757), mRNA	NA	coding protein	psRNATarget
XM_008682289.2	ncRNA:24   AAUA----AU-AUGAGGGAGGCAAAGAAA   1   *|=|----||-|||||||||||||||||| targets:1238   AUGUACGCUACUACUCCCUCCGUUUCUUU   1266 Target Full Sequence	2.0	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X6, mRNA	NA	coding protein	psRNATarget
EU973774.1	ncRNA:24   AAUA----AU-AUGAGGGAGGCAAAGAAA   1   *|=|----||-|||||||||||||||||| targets:1224   AUGUACGCUACUACUCCCUCCGUUUCUUU   1252 Target Full Sequence	2.0	Zea mays clone 410704 F-box domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682276.2	ncRNA:24   AAUA----AU-AUGAGGGAGGCAAAGAAA   1   *|=|----||-|||||||||||||||||| targets:1209   AUGUACGCUACUACUCCCUCCGUUUCUUU   1237 Target Full Sequence	2.0	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655254.2	ncRNA:24   AAUAAUA-UGAGGGAGGCAAAGAAA   1   ||*||*|-||||||||||||||||| targets:1042   UUCUUCUUACUCCCUCCGUUUCUUU   1066 Target Full Sequence	3.0	PREDICTED: Zea mays acid phosphatase 1 (LOC103633566), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541157.1	ncRNA:24   AAUAAUA-UGAGGGAGGCAAAGAAA   1   ||*||*|-||||||||||||||||| targets:1023   UUCUUCUUACUCCCUCCGUUUCUUU   1047 Target Full Sequence	3.0	PREDICTED: Zea mays acid phosphatase 1 (LOC103633566), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541158.1	ncRNA:24   AAUAAUA-UGAGGGAGGCAAAGAAA   1   ||*||*|-||||||||||||||||| targets:1021   UUCUUCUUACUCCCUCCGUUUCUUU   1045 Target Full Sequence	3.0	PREDICTED: Zea mays acid phosphatase 1 (LOC103633566), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT062074.1	ncRNA:24   AAUA----AU-AUGAGGGAGGCAAAGAAA   1   *|=|----||-|||||||||||||||||| targets:1126   AUGUACGCUACUACUCCCUCCGUUUCUUU   1154 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0212O02 mRNA, complete cds	NA	coding protein	psRNATarget
BT060817.2	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   |****||||||||||||||||||| targets:224   UACCAAUACUCCCUCCGUUUCUUU   247 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0054B23 mRNA, complete cds	NA	coding protein	psRNATarget
BT017382.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGA-AA   1   ||**||||||||||||||||||-|| targets:689   UUCAUAUACUCCCUCCGUUUCUCUU   713 Target Full Sequence	3.0	Zea mays clone EL01N0326E08.c mRNA sequence	NA	coding protein	psRNATarget
EU957987.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   **||*|||||=|||||||||=||| targets:797   GCAUGAUACUUCCUCCGUUUUUUU   820 Target Full Sequence	2.5	Zea mays clone 1639383 mRNA sequence	NA	coding protein	psRNATarget
NM_001317854.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   **||*|||||=|||||||||=||| targets:703   GCAUGAUACUUCCUCCGUUUUUUU   726 Target Full Sequence	2.5	Zea mays hypothetical protein (pco106324), transcript variant 1, mRNA	NA	coding protein	psRNATarget
EU958432.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   **||*|||||=|||||||||=||| targets:701   GCAUGAUACUUCCUCCGUUUUUUU   724 Target Full Sequence	2.5	Zea mays clone 1690368 mRNA sequence	NA	coding protein	psRNATarget
EU969134.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   **||*|||||=|||||||||=||| targets:793   GCAUGAUACUUCCUCCGUUUUUUU   816 Target Full Sequence	2.5	Zea mays clone 326231 mRNA sequence	NA	coding protein	psRNATarget
NM_001196915.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   **||*|||||=|||||||||=||| targets:778   GCAUGAUACUUCCUCCGUUUUUUU   801 Target Full Sequence	2.5	Zea mays hypothetical protein (pco106324), mRNA	NA	coding protein	psRNATarget
BT088169.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   **||*|||||=|||||||||=||| targets:778   GCAUGAUACUUCCUCCGUUUUUUU   801 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0042M19 mRNA, complete cds	NA	coding protein	psRNATarget
EU952378.1	ncRNA:24   AAUA-----AUAUGAGGGAGGCAAAGAAA   1   *|||-----||||||||||||||||*||| targets:702   CUAUAAAGAUAUACUCCCUCCGUUUAUUU   730 Target Full Sequence	1.5	Zea mays clone 1278936 mitochondrial import inner membrane translocase subunit TIM14 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
NM_001149263.2	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   **||*|||||=|||||||||=||| targets:697   GCAUGAUACUUCCUCCGUUUUUUU   720 Target Full Sequence	2.5	Zea mays hypothetical protein (pco106324), mRNA	NA	coding protein	psRNATarget
EZ112475.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   **||*|||||=|||||||||=||| targets:323   GCAUGAUACUUCCUCCGUUUUUUU   346 Target Full Sequence	2.5	TSA: Zea mays contig48136, mRNA sequence	NA	coding protein	psRNATarget
JB167785.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAG-AAA   1   |||--||||||||||||||||-||| targets:2   UUA--AUACUCCCUCCGUUUCGUUU   24 Target Full Sequence	3.0	Sequence 5449 from Patent EP2559767	NA	coding protein	psRNATarget
HI407324.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAG-AAA   1   |||--||||||||||||||||-||| targets:2   UUA--AUACUCCCUCCGUUUCGUUU   24 Target Full Sequence	3.0	Sequence 5449 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239454.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAG-AAA   1   |||--||||||||||||||||-||| targets:2   UUA--AUACUCCCUCCGUUUCGUUU   24 Target Full Sequence	3.0	Sequence 5449 from Patent EP2985353	NA	coding protein	psRNATarget
JB169789.1	ncRNA:21   AAUAUGAGGGAGGCAAAGAAA   1   **||||||||||||||||||| targets:1   CCAUACUCCCUCCGUUUCUUU   21 Target Full Sequence	0.0	Sequence 7453 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241458.1	ncRNA:21   AAUAUGAGGGAGGCAAAGAAA   1   **||||||||||||||||||| targets:1   CCAUACUCCCUCCGUUUCUUU   21 Target Full Sequence	0.0	Sequence 7453 from Patent EP2985353	NA	coding protein	psRNATarget
HI409328.1	ncRNA:21   AAUAUGAGGGAGGCAAAGAAA   1   **||||||||||||||||||| targets:1   CCAUACUCCCUCCGUUUCUUU   21 Target Full Sequence	0.0	Sequence 7453 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020544902.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   *|||*=||||||*||||||||||| targets:3144   AUAUAGUACUCCAUCCGUUUCUUU   3167 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100216637 (LOC100216637), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544903.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   *|||*=||||||*||||||||||| targets:3135   AUAUAGUACUCCAUCCGUUUCUUU   3158 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100216637 (LOC100216637), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008677073.2	ncRNA:24   AAUA-AU-AUGAGGGAGGCAAAGAAA   1   ||=*-||-|||||||||||||||||| targets:1519   UUGCCUACUACUCCCUCCGUUUCUUU   1544 Target Full Sequence	2.0	PREDICTED: Zea mays probable glycosyltransferase At5g03795 (LOC103651446), mRNA	NA	coding protein	psRNATarget
BT037092.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   *|||*=||||||*||||||||||| targets:1078   AUAUAGUACUCCAUCCGUUUCUUU   1101 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0154F16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143050.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   *|||*=||||||*||||||||||| targets:1078   AUAUAGUACUCCAUCCGUUUCUUU   1101 Target Full Sequence	2.5	Zea mays uncharacterized LOC100216637 (LOC100216637), mRNA	NA	coding protein	psRNATarget
JB170476.1	ncRNA:21   AAUAUGAGGGAGGCAAAGAAA   1   *|=|||||||||=|||||||| targets:1   AUGUACUCCCUCUGUUUCUUU   21 Target Full Sequence	2.5	Sequence 8140 from Patent EP2559767	NA	coding protein	psRNATarget
HI410015.1	ncRNA:21   AAUAUGAGGGAGGCAAAGAAA   1   *|=|||||||||=|||||||| targets:1   AUGUACUCCCUCUGUUUCUUU   21 Target Full Sequence	2.5	Sequence 8140 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242145.1	ncRNA:21   AAUAUGAGGGAGGCAAAGAAA   1   *|=|||||||||=|||||||| targets:1   AUGUACUCCCUCUGUUUCUUU   21 Target Full Sequence	2.5	Sequence 8140 from Patent EP2985353	NA	coding protein	psRNATarget
JB170060.1	ncRNA:21   AAUAUGAGGGAGGCAAAGAAA   1   |*||||||=|||||||||||| targets:1   UCAUACUCUCUCCGUUUCUUU   21 Target Full Sequence	1.5	Sequence 7724 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241729.1	ncRNA:21   AAUAUGAGGGAGGCAAAGAAA   1   |*||||||=|||||||||||| targets:1   UCAUACUCUCUCCGUUUCUUU   21 Target Full Sequence	1.5	Sequence 7724 from Patent EP2985353	NA	coding protein	psRNATarget
HI409599.1	ncRNA:21   AAUAUGAGGGAGGCAAAGAAA   1   |*||||||=|||||||||||| targets:1   UCAUACUCUCUCCGUUUCUUU   21 Target Full Sequence	1.5	Sequence 7724 from Patent EP2074227	NA	coding protein	psRNATarget
JB169031.1	ncRNA:20   AU-AUGAGGGAGGCAAAGAAA   1   ||-|||||||||||||||||| targets:1   UACUACUCCCUCCGUUUCUUU   21 Target Full Sequence	2.0	Sequence 6695 from Patent EP2559767	NA	coding protein	psRNATarget
HI408570.1	ncRNA:20   AU-AUGAGGGAGGCAAAGAAA   1   ||-|||||||||||||||||| targets:1   UACUACUCCCUCCGUUUCUUU   21 Target Full Sequence	2.0	Sequence 6695 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240700.1	ncRNA:20   AU-AUGAGGGAGGCAAAGAAA   1   ||-|||||||||||||||||| targets:1   UACUACUCCCUCCGUUUCUUU   21 Target Full Sequence	2.0	Sequence 6695 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008656936.2	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   **|**=|||||||||||||||||| targets:158   GAAAAGUACUCCCUCCGUUUCUUU   181 Target Full Sequence	1.0	PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381500), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008656166.2	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   *****||||||||||=|||||||| targets:1260   GAUGAAUACUCCCUCUGUUUCUUU   1283 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100193630 (LOC100193630), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT035950.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   *****||||||||||=|||||||| targets:1396   GAUGAAUACUCCCUCUGUUUCUUU   1419 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0089G20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138729.1	ncRNA:24   AAUAAUAUGAGGGAGGCAAAGAAA   1   *****||||||||||=|||||||| targets:1396   GAUGAAUACUCCCUCUGUUUCUUU   1419 Target Full Sequence	1.5	Zea mays uncharacterized LOC100193630 (LOC100193630), mRNA	NA	coding protein	psRNATarget