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BaseInfo

ncRNA ID	novel_zma_miR3820
Species	Zea mays
Class	miRNA
Genome position	Chr4:29855328-29855407 [-]
Reference genome	RefGen_v4
Source	SRR2287159
Length	24
Mature sequence(if miRNA)	57 - GGAGUGUAUUGGGUGGGAUUGAGA - 80
Stem-loop(if miRNA)	--GGA                    A   A   U  -  UG      GUGUAUUGGGUGGGAUUGAG UGG UUU GA CU  U      |||||||||||||||||||| ||| ||| || ||      UACAUAACCCACCCUAACUC GCC AAA UU GG  U AGGUG                    G   -   U  A  UA
Stem-loop sequence	GGAGUGUAUUGGGUGGGAUUGAGAUGGAUUUUGACUUGUUAUGGAUUUAAACCGGCUCAAUCCCACCCAAUACAUGUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008660051.2	ncRNA:24   AGAGUUAGGGUGGGUUAUGUGAGG   1   |||||||||||=|||||||||||| targets:1585   UCUCAAUCCCAUCCAAUACACUCC   1608 Target Full Sequence	1.5	PREDICTED: Zea mays putative MADS-box transcription factor family protein (MADS71), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ239020.1	ncRNA:24   AGAGUUAGGGUGGGUUAUGUGAGG   1   ||||||||=|||||||||||||=| targets:93   UCUCAAUCUCACCCAAUACACUUC   116 Target Full Sequence	2.5	Sequence 5015 from Patent EP2985353	NA	coding protein	psRNATarget
HI406890.1	ncRNA:24   AGAGUUAGGGUGGGUUAUGUGAGG   1   ||||||||=|||||||||||||=| targets:93   UCUCAAUCUCACCCAAUACACUUC   116 Target Full Sequence	2.5	Sequence 5015 from Patent EP2074227	NA	coding protein	psRNATarget
JB167351.1	ncRNA:24   AGAGUUAGGGUGGGUUAUGUGAGG   1   ||||||||=|||||||||||||=| targets:93   UCUCAAUCUCACCCAAUACACUUC   116 Target Full Sequence	2.5	Sequence 5015 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008681684.2	ncRNA:24   AGAGUUAGGGUGGGUUAUGUGAGG   1   ||||||||=|||||||||||||=| targets:2877   UCUCAAUCUCACCCAAUACACUUC   2900 Target Full Sequence	2.5	PREDICTED: Zea mays pyrophosphate-energized vacuolar membrane proton pump (LOC103654862), mRNA	NA	coding protein	psRNATarget
LQ240934.1	ncRNA:24   AGAGUUAGGGUGGGUUAUGUGAGG   1   *|*||||||||||||||||||||| targets:60   CCCCAAUCCCACCCAAUACACUCC   83 Target Full Sequence	0.0	Sequence 6929 from Patent EP2985353	NA	coding protein	psRNATarget
JB169265.1	ncRNA:24   AGAGUUAGGGUGGGUUAUGUGAGG   1   *|*||||||||||||||||||||| targets:60   CCCCAAUCCCACCCAAUACACUCC   83 Target Full Sequence	0.0	Sequence 6929 from Patent EP2559767	NA	coding protein	psRNATarget
HI408804.1	ncRNA:24   AGAGUUAGGGUGGGUUAUGUGAGG   1   *|*||||||||||||||||||||| targets:60   CCCCAAUCCCACCCAAUACACUCC   83 Target Full Sequence	0.0	Sequence 6929 from Patent EP2074227	NA	coding protein	psRNATarget
AY112306.1	ncRNA:24   AGAGUUAGGGUGGGUUAUGUGAGG   1   ||*=|||||||||=|||||||||| targets:101   UCCUAAUCCCACCUAAUACACUCC   124 Target Full Sequence	1.5	Zea mays CL30631_-1 mRNA sequence	NA	coding protein	psRNATarget
BT062534.2	ncRNA:24   AGAGUUAGGGUGGGUUAUGUGAGG   1   ||*=|||||||||=|||||||||| targets:64   UCCUAAUCCCACCUAAUACACUCC   87 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0310N08 mRNA, complete cds	NA	coding protein	psRNATarget
EU941886.1	ncRNA:24   AGAGUUAGGGUGGGUUAUGUGAGG   1   *|*|||||||||=||||||||||| targets:140   CCCCAAUCCCACUCAAUACACUCC   163 Target Full Sequence	1.5	Zea mays clone 1471521 mRNA sequence	NA	coding protein	psRNATarget
BT035580.1	ncRNA:24   AGAGUUAGGGUGGGUUAUGUGAGG   1   *|*|||||||||=||||||||||| targets:1238   CCCCAAUCCCACUCAAUACACUCC   1261 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0070I12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138477.1	ncRNA:24   AGAGUUAGGGUGGGUUAUGUGAGG   1   *|*|||||||||=||||||||||| targets:1238   CCCCAAUCCCACUCAAUACACUCC   1261 Target Full Sequence	1.5	Zea mays Transmembrane 9 superfamily member 9 (LOC100193342), mRNA	NA	coding protein	psRNATarget
XM_008668946.2	ncRNA:24   AGAGUUAGGGUGGGUUAUGUGAGG   1   *|*|||||||||=||||||||||| targets:2350   CCCCAAUCCCACUCAAUACACUCC   2373 Target Full Sequence	1.5	PREDICTED: Zea mays Transmembrane 9 superfamily member 9 (LOC100193342), transcript variant X1, mRNA	NA	coding protein	psRNATarget