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BaseInfo

ncRNA ID	novel_zma_miR3818
Species	Zea mays
Class	miRNA
Genome position	Chr10:115286574-115286627 [+]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	1 - AAAGAGUUUCUUUGUCGAGUGUCU - 24
Stem-loop(if miRNA)	--        U              UU   AAAGAGUU CUUUGUCGAGUGUC  U   |||||||| ||||||||||||||  U   UUUCUCGG GAAACGGCUCACAG  U UG        -              UU
Stem-loop sequence	AAAGAGUUUCUUUGUCGAGUGUCUUUUUUUGACACUCGGCAAAGGGCUCUUUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT055423.1	ncRNA:24   UCUGUGAGCUGUUUCUUUGAGAAA   1   |||||||||=||||||||=||||| targets:28   AGACACUCGGCAAAGAAAUUCUUU   51 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165647.1	ncRNA:24   UCUGUGAGCUGUUUCUUUGAGAAA   1   |||||||||=||||||||=||||| targets:28   AGACACUCGGCAAAGAAAUUCUUU   51 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   UCUGUGAGCUGUUUCUUUGAGAAA   1   |||||||||=||||||||=||||| targets:2047   AGACACUCGGCAAAGAAAUUCUUU   2070 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   UCUGUGAGCUGUUUCUUUGAGAAA   1   |||||||||=||||||||=||||| targets:2047   AGACACUCGGCAAAGAAAUUCUUU   2070 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   UCUGUGAGCUGUUUCUUUGAGAAA   1   =|=||||||=|||||||=|||||| targets:10   GGGCACUCGGCAAAGAAGCUCUUU   33 Target Full Sequence	2.5	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   UCUGUGAGCUGUUUCUUUGAGAAA   1   =|=||||||=|||||||=|||||| targets:10   GGGCACUCGGCAAAGAAGCUCUUU   33 Target Full Sequence	2.5	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   UCUGUGAGCUGUUUCUUUGAGAAA   1   =|=||||||=|||||||=|||||| targets:10   GGGCACUCGGCAAAGAAGCUCUUU   33 Target Full Sequence	2.5	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
BT042352.1	ncRNA:24   UCUGUGAGCUGUUUCUUUGAGAAA   1   **=||||||=|||||||=|||||| targets:1245   UUGCACUCGGCAAAGAAGCUCUUU   1268 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0207J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148473.2	ncRNA:24   UCUGUGAGCUGUUUCUUUGAGAAA   1   **=||||||=|||||||=|||||| targets:1295   UUGCACUCGGCAAAGAAGCUCUUU   1318 Target Full Sequence	2.5	Zea mays Protein CHLORORESPIRATORY REDUCTION 6 chloroplastic (si707021b11), mRNA	NA	coding protein	psRNATarget