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BaseInfo

ncRNA ID novel_zma_miR3815
Species Zea mays
Class miRNA
Genome position Chr4:116466449-116466504 [-]
Reference genome RefGen_v4
Source SRR2287159
Length 24
Mature sequence(if miRNA) 1 - GUUUAGAGGACGUUGUUGGAGAGC - 24
Stem-loop(if miRNA) --AA                    UUAG
    UCCAGCAGCGUCCUCUAAAU    A
    ||||||||||||||||||||
    AGGUUGUUGCAGGAGAUUUG    G
CGAG                    CCAG
Stem-loop sequence AAUCCAGCAGCGUCCUCUAAAUUUAGAGGACCGUUUAGAGGACGUUGUUGGAGAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008662066.2
ncRNA:24   CGAGAGGUUGUUGCAGGAGAUUUG   1
  *||||||||||||||||||||||=
targets:1095   CCUCUCCAACAACGUCCUCUAAAU   1118

1.0 PREDICTED: Zea mays zinc finger protein ZAT8 (LOC103639302), mRNA NA coding protein psRNATarget
BT054524.1
ncRNA:24   CGAGAGGUUGUUGCAGGAGAUUUG   1
  *||||||||||||||||||||||=
targets:1757   UCUCUCCAACAACGUCCUCUAAAU   1780

1.0 Zea mays full-length cDNA clone ZM_BFc0129H19 mRNA, complete cds NA coding protein psRNATarget
NM_001152587.1
ncRNA:24   CGAGAGGUUGUUGCAGGAGAUUUG   1
  *||||||||||||||||||||||=
targets:1757   UCUCUCCAACAACGUCCUCUAAAU   1780

1.0 Zea mays putative putrescine-binding domain family protein (LOC100279590), mRNA NA coding protein psRNATarget
XM_008680895.2
ncRNA:24   CGAGAGGUUGUUGCAGGAGAUUUG   1
  *||||||||||||||||||||||=
targets:2709   UCUCUCCAACAACGUCCUCUAAAU   2732

1.0 PREDICTED: Zea mays signal peptidase complex catalytic subunit SEC11C (LOC103654093), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008680896.2
ncRNA:24   CGAGAGGUUGUUGCAGGAGAUUUG   1
  *||||||||||||||||||||||=
targets:2881   UCUCUCCAACAACGUCCUCUAAAU   2904

1.0 PREDICTED: Zea mays signal peptidase complex catalytic subunit SEC11C (LOC103654093), transcript variant X3, mRNA NA coding protein psRNATarget
EU945347.1
ncRNA:24   CGAGAGGUUGUUGCAGGAGAUUUG   1
  *||||||||=|||||||||||||=
targets:354   CCUCUCCAAUAACGUCCUCUAAAU   377

2.0 Zea mays clone 260245 mRNA sequence NA coding protein psRNATarget
LQ238002.1
ncRNA:24   CGAGAGGUUGUUGCAGGAGAUUUG   1
  ||*|||||=||=||||||||||||
targets:3   GCCCUCCAGCAGCGUCCUCUAAAC   26

2.5 Sequence 3997 from Patent EP2985353 NA coding protein psRNATarget
HI405872.1
ncRNA:24   CGAGAGGUUGUUGCAGGAGAUUUG   1
  ||*|||||=||=||||||||||||
targets:3   GCCCUCCAGCAGCGUCCUCUAAAC   26

2.5 Sequence 3997 from Patent EP2074227 NA coding protein psRNATarget
JB166333.1
ncRNA:24   CGAGAGGUUGUUGCAGGAGAUUUG   1
  ||*|||||=||=||||||||||||
targets:3   GCCCUCCAGCAGCGUCCUCUAAAC   26

2.5 Sequence 3997 from Patent EP2559767 NA coding protein psRNATarget
EU975903.1
ncRNA:24   CGAGAGGUUGUUGCAGGAGAUUUG   1
  ||*|||||=||=||||||||||||
targets:658   GCCCUCCAGCAGCGUCCUCUAAAC   681

2.5 Zea mays clone 504920 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
LQ238111.1
ncRNA:24   CGAG--AGGUUGUUGCAGGAGAUUUG   1
  *|||--||||=|||||||||||||||
targets:5   ACUCCCUCCAGCAACGUCCUCUAAAC   30

1.0 Sequence 4106 from Patent EP2985353 NA coding protein psRNATarget
JB166442.1
ncRNA:24   CGAG--AGGUUGUUGCAGGAGAUUUG   1
  *|||--||||=|||||||||||||||
targets:5   ACUCCCUCCAGCAACGUCCUCUAAAC   30

1.0 Sequence 4106 from Patent EP2559767 NA coding protein psRNATarget
HI405981.1
ncRNA:24   CGAG--AGGUUGUUGCAGGAGAUUUG   1
  *|||--||||=|||||||||||||||
targets:5   ACUCCCUCCAGCAACGUCCUCUAAAC   30

1.0 Sequence 4106 from Patent EP2074227 NA coding protein psRNATarget
LQ238109.1
ncRNA:24   CGAGAGGUUGUUGCAGGAGAUUUG   1
  *|*|||||=|||||||||||||||
targets:7   CCCCUCCAGCAACGUCCUCUAAAC   30

1.0 Sequence 4104 from Patent EP2985353 NA coding protein psRNATarget
JB166440.1
ncRNA:24   CGAGAGGUUGUUGCAGGAGAUUUG   1
  *|*|||||=|||||||||||||||
targets:7   CCCCUCCAGCAACGUCCUCUAAAC   30

1.0 Sequence 4104 from Patent EP2559767 NA coding protein psRNATarget
HI405979.1
ncRNA:24   CGAGAGGUUGUUGCAGGAGAUUUG   1
  *|*|||||=|||||||||||||||
targets:7   CCCCUCCAGCAACGUCCUCUAAAC   30

1.0 Sequence 4104 from Patent EP2074227 NA coding protein psRNATarget
LQ237982.1
ncRNA:24   CGAGAGGUUGUUGCAGGAGAUUUG   1
  *|*|||||=|||||||||||||||
targets:8   CCCCUCCAGCAACGUCCUCUAAAC   31

1.0 Sequence 3977 from Patent EP2985353 NA coding protein psRNATarget
HI405852.1
ncRNA:24   CGAGAGGUUGUUGCAGGAGAUUUG   1
  *|*|||||=|||||||||||||||
targets:8   CCCCUCCAGCAACGUCCUCUAAAC   31

1.0 Sequence 3977 from Patent EP2074227 NA coding protein psRNATarget
JB166313.1
ncRNA:24   CGAGAGGUUGUUGCAGGAGAUUUG   1
  *|*|||||=|||||||||||||||
targets:8   CCCCUCCAGCAACGUCCUCUAAAC   31

1.0 Sequence 3977 from Patent EP2559767 NA coding protein psRNATarget
EU945316.1
ncRNA:24   CGAGAGGUUGUUGCAGGAGAUUUG   1
  *|*|||||=|||||||||||||||
targets:1313   CCCCUCCAGCAACGUCCUCUAAAC   1336

1.0 Zea mays clone 257973 mRNA sequence NA coding protein psRNATarget
XM_008677400.2
ncRNA:24   CGAGAGGUUGUUGCAGGAGAUUUG   1
  *|||||||||||||*||||||||=
targets:5071   UCUCUCCAACAACGCCCUCUAAAU   5094

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g65560-like (LOC103651695), mRNA NA coding protein psRNATarget
EZ094330.1
ncRNA:24   CGAGAGGUUGUUGCAGGAGAUUUG   1
  *|*|||||=|||=|||||||||||
targets:15   UCCCUCCAGCAAUGUCCUCUAAAC   38

2.5 TSA: Zea mays contig29982, mRNA sequence NA coding protein psRNATarget
EU943788.1
ncRNA:24   CGAGAGGUUGUUGCAGGAGAUUUG   1
  *=||||||||||||||||*||||=
targets:181   UUUCUCCAACAACGUCCUAUAAAU   204

2.5 Zea mays clone 1687319 mRNA sequence NA coding protein psRNATarget
XM_008683257.2
ncRNA:24   CGA--GAGGUUGUUGCAGGAGAUUUG   1
  |||--=|=||=||||||||||||||=
targets:4144   GCUGUUUUCAGCAACGUCCUCUAAAU   4169

3.0 PREDICTED: Zea mays Tubulin-folding cofactor D (LOC100273796), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547328.1
ncRNA:24   CGAGAGGUUGUUGCAGGAGAUUUG   1
  *=||||||||||||||||*||||=
targets:5212   UUUCUCCAACAACGUCCUAUAAAU   5235

2.5 PREDICTED: Zea mays phosphoinositide-specific phospholipase C (LOC100136827), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020550176.1
ncRNA:24   CGAGAGGUUGUUGCAGGAGAUUUG   1
  **|||||||||||||||*|||||=
targets:1001   CAUCUCCAACAACGUCCCCUAAAU   1024

2.5 PREDICTED: Zea mays small G protein signaling modulator 1 (LOC103649936), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008660954.2
ncRNA:24   CGAGAGGUUGUUGCAGGAGAUUUG   1
  **||||||||||*||||||||||*
targets:138   CGUCUCCAACAAGGUCCUCUAAAG   161

2.5 PREDICTED: Zea mays Anaphase-promoting complex subunit 4 (LOC103637954), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008660953.2
ncRNA:24   CGAGAGGUUGUUGCAGGAGAUUUG   1
  **||||||||||*||||||||||*
targets:138   CGUCUCCAACAAGGUCCUCUAAAG   161

2.5 PREDICTED: Zea mays Anaphase-promoting complex subunit 4 (LOC103637954), transcript variant X1, mRNA NA coding protein psRNATarget
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