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BaseInfo

ncRNA ID novel_zma_miR3814
Species Zea mays
Class miRNA
Genome position Chr4:118144742-118144870 [-]
Reference genome RefGen_v4
Source SRR2287159
Length 24
Mature sequence(if miRNA) 1 - UCCGGUACAACCGAACAGGCCCUA - 24
Stem-loop(if miRNA) -   C             U     UUG     UC     A     U   -  GAUUACU   C  A
 AGG CCUGUUCGGUUGU CCGGA   GAGCC  GGAUU AUUCC AGC CG       UCU UA U
 ||| ||||||||||||| |||||   |||||  ||||| ||||| ||| ||       ||| || U
 UCC GGACAAGCCAACA GGCCU   CUCGG  CCUAA UAAGG UCG GU       AGA AU U
A   C             U     -UA     -U     G     -   A  -AGUUUU   U  A
Stem-loop sequence AGGCCCUGUUCGGUUGUUCCGGAUUGGAGCCUCGGAUUAAUUCCUAGCCGGAUUACUUCUCUAAUUUAUAUAGAUUUUGAUGAGCUGGAAUGAAUCCUGGCUCAUUCCGGUACAACCGAACAGGCCCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235043.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||||||||||||||||||||||
targets:1   UAGGGCCUGUUCGGUUGUACCGGA   24

0.0 Sequence 1038 from Patent EP2985353 NA coding protein psRNATarget
JB163374.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||||||||||||||||||||||
targets:1   UAGGGCCUGUUCGGUUGUACCGGA   24

0.0 Sequence 1038 from Patent EP2559767 NA coding protein psRNATarget
HI402913.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||||||||||||||||||||||
targets:1   UAGGGCCUGUUCGGUUGUACCGGA   24

0.0 Sequence 1038 from Patent EP2074227 NA coding protein psRNATarget
EU951433.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  |||||=||||||||||||||||||
targets:1221   UAGGGUCUGUUCGGUUGUACCGGA   1244

1.0 Zea mays clone 701850 mRNA sequence NA coding protein psRNATarget
HI407312.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  *|||||||||||||||||||||||
targets:13   AAGGGCCUGUUCGGUUGUACCGGA   36

0.0 Sequence 5437 from Patent EP2074227 NA coding protein psRNATarget
JB167773.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  *|||||||||||||||||||||||
targets:13   AAGGGCCUGUUCGGUUGUACCGGA   36

0.0 Sequence 5437 from Patent EP2559767 NA coding protein psRNATarget
LQ239442.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  *|||||||||||||||||||||||
targets:13   AAGGGCCUGUUCGGUUGUACCGGA   36

0.0 Sequence 5437 from Patent EP2985353 NA coding protein psRNATarget
XM_020551773.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  *|||||||||||||||||||||||
targets:2096   AAGGGCCUGUUCGGUUGUACCGGA   2119

0.0 PREDICTED: Zea mays putative disease resistance protein RGA1 (LOC109945454), mRNA NA coding protein psRNATarget
JB166508.1
ncRNA:23   UCCCGGACAAGCCAACAUGGCCU   1
  ||||=||||||||||||||||||
targets:1   AGGGUCUGUUCGGUUGUACCGGA   23

1.0 Sequence 4172 from Patent EP2559767 NA coding protein psRNATarget
HI406047.1
ncRNA:23   UCCCGGACAAGCCAACAUGGCCU   1
  ||||=||||||||||||||||||
targets:1   AGGGUCUGUUCGGUUGUACCGGA   23

1.0 Sequence 4172 from Patent EP2074227 NA coding protein psRNATarget
LQ238177.1
ncRNA:23   UCCCGGACAAGCCAACAUGGCCU   1
  ||||=||||||||||||||||||
targets:1   AGGGUCUGUUCGGUUGUACCGGA   23

1.0 Sequence 4172 from Patent EP2985353 NA coding protein psRNATarget
LQ238052.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  *||||=||||||||||||||||||
targets:1   AAGGGUCUGUUCGGUUGUACCGGA   24

1.0 Sequence 4047 from Patent EP2985353 NA coding protein psRNATarget
JB166383.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  *||||=||||||||||||||||||
targets:1   AAGGGUCUGUUCGGUUGUACCGGA   24

1.0 Sequence 4047 from Patent EP2559767 NA coding protein psRNATarget
HI405922.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  *||||=||||||||||||||||||
targets:1   AAGGGUCUGUUCGGUUGUACCGGA   24

1.0 Sequence 4047 from Patent EP2074227 NA coding protein psRNATarget
JB163483.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  *|||||=|||||||||||||||||
targets:1   AAGGGCUUGUUCGGUUGUACCGGA   24

1.0 Sequence 1147 from Patent EP2559767 NA coding protein psRNATarget
HI403022.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  *|||||=|||||||||||||||||
targets:1   AAGGGCUUGUUCGGUUGUACCGGA   24

1.0 Sequence 1147 from Patent EP2074227 NA coding protein psRNATarget
LQ235152.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  *|||||=|||||||||||||||||
targets:1   AAGGGCUUGUUCGGUUGUACCGGA   24

1.0 Sequence 1147 from Patent EP2985353 NA coding protein psRNATarget
HI403083.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||||||||||||||||*|||||
targets:1   UAGGGCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1208 from Patent EP2074227 NA coding protein psRNATarget
LQ235213.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||||||||||||||||*|||||
targets:1   UAGGGCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1208 from Patent EP2985353 NA coding protein psRNATarget
JB163544.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||||||||||||||||*|||||
targets:1   UAGGGCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1208 from Patent EP2559767 NA coding protein psRNATarget
LQ235273.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  |||||||*||||||||||||||||
targets:83   UAGGGCCAGUUCGGUUGUACCGGA   106

1.0 Sequence 1268 from Patent EP2985353 NA coding protein psRNATarget
JB163506.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  |||||||*||||||||||||||||
targets:83   UAGGGCCAGUUCGGUUGUACCGGA   106

1.0 Sequence 1170 from Patent EP2559767 NA coding protein psRNATarget
HI403045.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  |||||||*||||||||||||||||
targets:83   UAGGGCCAGUUCGGUUGUACCGGA   106

1.0 Sequence 1170 from Patent EP2074227 NA coding protein psRNATarget
LQ235175.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  |||||||*||||||||||||||||
targets:83   UAGGGCCAGUUCGGUUGUACCGGA   106

1.0 Sequence 1170 from Patent EP2985353 NA coding protein psRNATarget
HI403143.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  |||||||*||||||||||||||||
targets:83   UAGGGCCAGUUCGGUUGUACCGGA   106

1.0 Sequence 1268 from Patent EP2074227 NA coding protein psRNATarget
JB163604.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  |||||||*||||||||||||||||
targets:83   UAGGGCCAGUUCGGUUGUACCGGA   106

1.0 Sequence 1268 from Patent EP2559767 NA coding protein psRNATarget
JB163542.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1206 from Patent EP2559767 NA coding protein psRNATarget
HI403081.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1206 from Patent EP2074227 NA coding protein psRNATarget
HI403046.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1171 from Patent EP2074227 NA coding protein psRNATarget
HI403068.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1193 from Patent EP2074227 NA coding protein psRNATarget
LQ235198.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1193 from Patent EP2985353 NA coding protein psRNATarget
LQ235132.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1127 from Patent EP2985353 NA coding protein psRNATarget
LQ235249.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1244 from Patent EP2985353 NA coding protein psRNATarget
JB163581.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1245 from Patent EP2559767 NA coding protein psRNATarget
LQ235138.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1133 from Patent EP2985353 NA coding protein psRNATarget
JB163529.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1193 from Patent EP2559767 NA coding protein psRNATarget
JB163496.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1160 from Patent EP2559767 NA coding protein psRNATarget
HI403002.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1127 from Patent EP2074227 NA coding protein psRNATarget
LQ235176.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1171 from Patent EP2985353 NA coding protein psRNATarget
JB163580.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1244 from Patent EP2559767 NA coding protein psRNATarget
JB163507.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1171 from Patent EP2559767 NA coding protein psRNATarget
LQ235211.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1206 from Patent EP2985353 NA coding protein psRNATarget
JB163463.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1127 from Patent EP2559767 NA coding protein psRNATarget
HI403035.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1160 from Patent EP2074227 NA coding protein psRNATarget
HI403119.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1244 from Patent EP2074227 NA coding protein psRNATarget
JB163469.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1133 from Patent EP2559767 NA coding protein psRNATarget
LQ235165.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1160 from Patent EP2985353 NA coding protein psRNATarget
HI403008.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1133 from Patent EP2074227 NA coding protein psRNATarget
HI403120.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1245 from Patent EP2074227 NA coding protein psRNATarget
LQ235250.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1245 from Patent EP2985353 NA coding protein psRNATarget
BT041278.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:387   UAGGCCCUGUUCGGUUGUUCCGGA   410

1.5 Zea mays full-length cDNA clone ZM_BFb0135F17 mRNA, complete cds NA coding protein psRNATarget
XM_020549609.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:1257   UAGGCCCUGUUCGGUUGUUCCGGA   1280

1.5 PREDICTED: Zea mays hypothetical protein (LOC100275396), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001138362.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  |||||||||*||||||*|||||||
targets:1355   UAGGGCCUGAUCGGUUAUACCGGA   1378

2.5 Zea mays Enhanced ethylene response protein 5 (LOC100193209), mRNA NA coding protein psRNATarget
BT035415.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  |||||||||*||||||*|||||||
targets:1355   UAGGGCCUGAUCGGUUAUACCGGA   1378

2.5 Zea mays full-length cDNA clone ZM_BFb0059N16 mRNA, complete cds NA coding protein psRNATarget
XM_020542682.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:795   UAGGCCCUGUUCGGUUGUUCCGGA   818

1.5 PREDICTED: Zea mays uncharacterized LOC109939377 (LOC109939377), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020542681.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*|||||||||||||*|||||
targets:890   UAGGCCCUGUUCGGUUGUUCCGGA   913

1.5 PREDICTED: Zea mays uncharacterized LOC109939377 (LOC109939377), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001350330.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  |||||||*||||||||||||*|||
targets:3165   UAGGGCCCGUUCGGUUGUACAGGA   3188

2.5 Zea mays uncharacterized LOC100191405 (LOC100191405), mRNA NA coding protein psRNATarget
HI403060.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*=||||||||||||*|||||
targets:1   UAGGCUCUGUUCGGUUGUUCCGGA   24

2.5 Sequence 1185 from Patent EP2074227 NA coding protein psRNATarget
JB163521.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*=||||||||||||*|||||
targets:1   UAGGCUCUGUUCGGUUGUUCCGGA   24

2.5 Sequence 1185 from Patent EP2559767 NA coding protein psRNATarget
LQ235190.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  ||||*=||||||||||||*|||||
targets:1   UAGGCUCUGUUCGGUUGUUCCGGA   24

2.5 Sequence 1185 from Patent EP2985353 NA coding protein psRNATarget
HI403128.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  *|||*|||||||||||||*|||||
targets:1   AAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1253 from Patent EP2074227 NA coding protein psRNATarget
HI402959.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  *|||*|||||||||||||*|||||
targets:1   AAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1084 from Patent EP2074227 NA coding protein psRNATarget
LQ235195.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  *|||*|||||||||||||*|||||
targets:1   AAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1190 from Patent EP2985353 NA coding protein psRNATarget
JB163420.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  *|||*|||||||||||||*|||||
targets:1   AAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1084 from Patent EP2559767 NA coding protein psRNATarget
LQ235089.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  *|||*|||||||||||||*|||||
targets:1   AAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1084 from Patent EP2985353 NA coding protein psRNATarget
HI403134.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  *|||*|||||||||||||*|||||
targets:1   AAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1259 from Patent EP2074227 NA coding protein psRNATarget
JB163595.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  *|||*|||||||||||||*|||||
targets:1   AAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1259 from Patent EP2559767 NA coding protein psRNATarget
LQ235264.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  *|||*|||||||||||||*|||||
targets:1   AAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1259 from Patent EP2985353 NA coding protein psRNATarget
HI403065.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  *|||*|||||||||||||*|||||
targets:1   AAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1190 from Patent EP2074227 NA coding protein psRNATarget
JB163526.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  *|||*|||||||||||||*|||||
targets:1   AAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1190 from Patent EP2559767 NA coding protein psRNATarget
LQ235258.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  *|||*|||||||||||||*|||||
targets:1   AAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1253 from Patent EP2985353 NA coding protein psRNATarget
JB163589.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  *|||*|||||||||||||*|||||
targets:1   AAGGCCCUGUUCGGUUGUUCCGGA   24

1.5 Sequence 1253 from Patent EP2559767 NA coding protein psRNATarget
EU962159.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  *||||*||||||||||||*|||||
targets:635   AAGGGACUGUUCGGUUGUUCCGGA   658

2.5 Zea mays clone 240647 metallothionein-like protein type 2 mRNA, complete cds NA coding protein psRNATarget
EU964173.1
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  *||||*||||||||||||*|||||
targets:637   AAGGGACUGUUCGGUUGUUCCGGA   660

2.5 Zea mays clone 276459 metallothionein-like protein type 2 mRNA, complete cds NA coding protein psRNATarget
XM_008658796.2
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  *|||*|||||||||||||*|||||
targets:2191   GAGGCCCUGUUCGGUUGUUCCGGA   2214

1.5 PREDICTED: Zea mays hypothetical protein (LOC103636441), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658795.2
ncRNA:24   AUCCCGGACAAGCCAACAUGGCCU   1
  *|||*|||||||||||||*|||||
targets:2208   GAGGCCCUGUUCGGUUGUUCCGGA   2231

1.5 PREDICTED: Zea mays hypothetical protein (LOC103636441), transcript variant X1, mRNA NA coding protein psRNATarget