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BaseInfo

ncRNA ID	novel_zma_miR3813
Species	Zea mays
Class	miRNA
Genome position	Chr10:81355208-81355326 [+]
Reference genome	RefGen_v4
Source	SRR2287159
Length	24
Mature sequence(if miRNA)	96 - AGUAGAAUAAAAUGGAGGGACUAA - 119
Stem-loop(if miRNA)	--          A            U   CAC        C              A      AGUCCCUCCA UUUAUUCUACUU AGU   UAAAUUGU AAAUAUGGAAACUA AAUA   |||||||||| |||||||||||| |||   |||||||| |||||||||||||| |||G   UCAGGGAGGU AAAUAAGAUGAA UCA   AUUUAACG UUUAUACCUUUGAU UUGA AA          A            U   AAU        U              A
Stem-loop sequence	AGUCCCUCCAAUUUAUUCUACUUUAGUCACUAAAUUGUCAAAUAUGGAAACUAAAAUAGAGUUAUAGUUUCCAUAUUUUGCAAUUUAUAAACUUAAGUAGAAUAAAAUGGAGGGACUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001112512.2	ncRNA:24   AAUCAGGGAGGUAAAAUAAGAUGA   1   |||||||||=||||||||||||=| targets:1666   UUAGUCCCUUCAUUUUAUUCUAUU   1689 Target Full Sequence	2.5	Zea mays Aldose reductase (pco147797a), mRNA	NA	coding protein	psRNATarget
NM_001112512.2	ncRNA:24   AAUCAGGGAGGUAAAAUAAGAUGA   1   |||||||||*||||||||||||=| targets:1569   UUAGUCCCUACAUUUUAUUCUAUU   1592 Target Full Sequence	2.5	Zea mays Aldose reductase (pco147797a), mRNA	NA	coding protein	psRNATarget
XM_008680551.2	ncRNA:24   AAUCAGGGAGGUAAAAUAAGAUGA   1   |||||||||=||||||||||||=| targets:836   UUAGUCCCUUCAUUUUAUUCUAUU   859 Target Full Sequence	2.5	PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163516.1	ncRNA:24   AAUCAGGGAGGUAAAAUAAGAUGA   1   |||||||||=||||||||||||=| targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50 Target Full Sequence	2.5	Sequence 1180 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235185.1	ncRNA:24   AAUCAGGGAGGUAAAAUAAGAUGA   1   |||||||||=||||||||||||=| targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50 Target Full Sequence	2.5	Sequence 1180 from Patent EP2985353	NA	coding protein	psRNATarget
HI403055.1	ncRNA:24   AAUCAGGGAGGUAAAAUAAGAUGA   1   |||||||||=||||||||||||=| targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50 Target Full Sequence	2.5	Sequence 1180 from Patent EP2074227	NA	coding protein	psRNATarget
JB163511.1	ncRNA:24   AAUCAGGGAGGUAAAAUAAGAUGA   1   |||||||||=||||||||||||=| targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50 Target Full Sequence	2.5	Sequence 1175 from Patent EP2559767	NA	coding protein	psRNATarget
HI403050.1	ncRNA:24   AAUCAGGGAGGUAAAAUAAGAUGA   1   |||||||||=||||||||||||=| targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50 Target Full Sequence	2.5	Sequence 1175 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235180.1	ncRNA:24   AAUCAGGGAGGUAAAAUAAGAUGA   1   |||||||||=||||||||||||=| targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50 Target Full Sequence	2.5	Sequence 1175 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008647122.2	ncRNA:24   AAUCAGGGAGGUAAAAUAAGAUGA   1   ||||||||||||||||||||*||| targets:2987   UUAGUCCCUCCAUUUUAUUCCACU   3010 Target Full Sequence	1.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:24   AAUCAGGGAGGUAAAAUAAGAUGA   1   ||||||||||||||||||||*||| targets:2598   UUAGUCCCUCCAUUUUAUUCCACU   2621 Target Full Sequence	1.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651702.2	ncRNA:24   AAUCAGGGAGGUAAAAUAAGAUGA   1   ||||||||||||||||||||*||| targets:480   UUAGUCCCUCCAUUUUAUUCCACU   503 Target Full Sequence	1.5	PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EZ060524.1	ncRNA:24   AAUCAGGGAGGUAAAAUAAGAUGA   1   |||||||||*||||||||||||=| targets:69   UUAGUCCCUACAUUUUAUUCUAUU   92 Target Full Sequence	2.5	TSA: Zea mays contig61646, mRNA sequence	NA	coding protein	psRNATarget
XM_020546793.1	ncRNA:24   AAUCAGGGAGGUAAAAUAAGAUGA   1   |||||||||*||||||||||||*| targets:3591   UUAGUCCCUACAUUUUAUUCUAAU   3614 Target Full Sequence	2.5	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546794.1	ncRNA:24   AAUCAGGGAGGUAAAAUAAGAUGA   1   |||||||||*||||||||||||*| targets:3554   UUAGUCCCUACAUUUUAUUCUAAU   3577 Target Full Sequence	2.5	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546795.1	ncRNA:24   AAUCAGGGAGGUAAAAUAAGAUGA   1   |||||||||*||||||||||||*| targets:3504   UUAGUCCCUACAUUUUAUUCUAAU   3527 Target Full Sequence	2.5	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546796.1	ncRNA:24   AAUCAGGGAGGUAAAAUAAGAUGA   1   |||||||||*||||||||||||*| targets:3429   UUAGUCCCUACAUUUUAUUCUAAU   3452 Target Full Sequence	2.5	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008660555.2	ncRNA:24   AAUCAGGGAGGUAAAAUAAGAUGA   1   |||||||||*||||||||||*||| targets:1915   UUAGUCCCUACAUUUUAUUCCACU   1938 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat protein PPR566-6 (LOC100381697), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT018349.1	ncRNA:24   AAUCAGGGAGGUAAAAUAAGAUGA   1   |||||||||*||||||||||||*| targets:585   UUAGUCCCUACAUUUUAUUCUAAU   608 Target Full Sequence	2.5	Zea mays clone EL01T0403E10.c mRNA sequence	NA	coding protein	psRNATarget
EU941753.1	ncRNA:24   AAUCAGGGAGGUAAAAUAAGAUGA   1   |||||||||*||||||||||||*| targets:30   UUAGUCCCUACAUUUUAUUCUAAU   53 Target Full Sequence	2.5	Zea mays clone 1469712 mRNA sequence	NA	coding protein	psRNATarget