Search result

BaseInfo

ncRNA ID osa-miR3980a-5p
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source miRBase
Length 21
Mature sequence(if miRNA) NA - AAUCGACGGCCUCAGUCAGGG - NA
Stem-loop(if miRNA)                UCU    C                    A      -----G    ----  UCCCCUUGAGCUCGGGAGACGCAUUCUGCUUUGGC
GCGGCGUCUUCCUCU   UCCC UUAGGAGAAUCGACGGCCUC GUCAGG      GCGC    CU                                   U
|||||||||||||||   |||| |||||||||||||||||||| ||||||      ||||    ||
CGCCGCAGAAGGAGA   AGGG GAUCCUCUUAGCUGCCGGAG CGGUCC      ACAG    AG                                   G
               ---    C                    C      UGCUUC    AUUA  GCCACUGCUGUUCCCGGGCGGCCUCGGACGCGGGG
Stem-loop sequence GCGGCGUCUUCCUCUUCUUCCCCUUAGGAGAAUCGACGGCCUCAGUCAGGGGCGCCUUCCCCUUGAGCUCGGGAGACGCAUUCUGCUUUGGCUGGGGGCGCAGGCUCCGGCGGGCCCUUGUCGUCACCGGAAUUAGACACUUCGUCCUGGCCGAGGCCGUCGAUUCUCCUAGCGGGAAGAGGAAGACGCCGC

Reference

1 PMID:21113019
"Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)";
Li T, Li H, Zhang YX, Liu JY;
Nucleic Acids Res. 39:2821-2833(2011).