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BaseInfo

ncRNA ID novel_zma_miR3809
Species Zea mays
Class miRNA
Genome position Chr4:30060269-30060372 [+]
Reference genome RefGen_v4
Source SRR2287159
Length 21
Mature sequence(if miRNA) 1 - AGGGGAUGGGGAAGUUUCUUC - 21
Stem-loop(if miRNA) --A            -GU      --------      GGGG  G  AA       AA
   GGGGAUGGGGAA   UUCUUC        CCCCAU    AU UA  CGGGGAA  A
   ||||||||||||   ||||||        ||||||    || ||  |||||||
   UCCCUACCCCUU   AAGAGG        GGGGUA    UG GU  GCCCCUU  U
UUG            AUG      UAGGGGCA      --AA  G  -A       AU
Stem-loop sequence AGGGGAUGGGGAAGUUUCUUCCCCCAUGGGGAUGUAAACGGGGAAAAAUUAUUCCCCGAUGGGUAAAUGGGGACGGGGAUGGAGAAGUAUUCCCCAUCCCUGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020542351.1
ncRNA:21   CUUCUUUGAAGGGGUAGGGGA   1
  |||||||=||||||||||||*
targets:370   GAAGAAAUUUCCCCAUCCCCG   390

2.0 PREDICTED: Zea mays uncharacterized LOC103634680 (LOC103634680), transcript variant X5, mRNA NA coding protein psRNATarget