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BaseInfo

ncRNA ID novel_zma_miR3808
Species Zea mays
Class miRNA
Genome position Chr4:188875006-188875079 [-]
Reference genome RefGen_v4
Source SRR2287159
Length 24
Mature sequence(if miRNA) 51 - GGUGCUCUCUGGCCAGGCGCGGAC - 74
Stem-loop(if miRNA) --GGU    U   -      -       G C  GC    
     GCUC CUG GCCAGG CGCGGAC G CC  GGCCU
     |||| ||| |||||| ||||||| | ||  ||||G
     CGAG GAC UGGUCC GCGCCUG C GG  UCGGG
GGGUU    -   G      A       G A  --    
Stem-loop sequence GGUGCUCUCUGGCCAGGCGCGGACGGCCCGCGGCCUGGGGCUGGACGGUCCGCGACCUGGUGCAGGAGCUUGGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ096610.1
ncRNA:24   CAGGCGCGGACCGGUCUCUCGUGG   1
  |||||||=|||*||||||||||||
targets:29   GUCCGCGUCUGACCAGAGAGCACC   52

2.5 TSA: Zea mays contig32265, mRNA sequence NA coding protein psRNATarget