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BaseInfo

ncRNA ID	novel_zma_miR3800
Species	Zea mays
Class	miRNA
Genome position	Chr4:194285980-194286055 [-]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2287160;SRR2287165
Length	19
Mature sequence(if miRNA)	58 - CGGGGAGGAAGGGGACGAG - 76
Stem-loop(if miRNA)	--C    --        GA  A  AG GAAGAGUCUUCGCC    GGGG  AGGAAGGG  CG GC  A              G    ||||  ||||||||  || ||  |    CCUC  UCCUUCCU  GG CU  C              A CGU    GU        -A  -  -- CACCAGGACGAGCC
Stem-loop sequence	CGGGGAGGAAGGGGACGAGCAGAGAAGAGUCUUCGCCGACCGAGCAGGACCACCUCGGAUCCUUCCUUGCUCCUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT035814.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   |||||||||||||||=||| targets:300   CUCGUCCCCUUCCUCUCCG   318 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0084H16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138644.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   |||||||||||||||=||| targets:300   CUCGUCCCCUUCCUCUCCG   318 Target Full Sequence	1.5	Zea mays uncharacterized LOC100193533 (LOC100193533), mRNA	NA	coding protein	psRNATarget
BT087242.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   |||||||||||||||=||| targets:314   CUCGUCCCCUUCCUCUCCG   332 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0012D24 mRNA, complete cds	NA	coding protein	psRNATarget
EU966619.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   ||||||||||||||||||* targets:39   CUCGUCCCCUUCCUCCCCU   57 Target Full Sequence	1.0	Zea mays clone 295672 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150746.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   ||||||||||||||||||* targets:39   CUCGUCCCCUUCCUCCCCU   57 Target Full Sequence	1.0	Zea mays TRAM LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (LOC100277080), mRNA	NA	coding protein	psRNATarget
XM_008673668.2	ncRNA:19   GA-GCAGGGGAAGGAGGGGC   1   ||-||||||||||||||||| targets:528   CUGCGUCCCCUUCCUCCCCG   547 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100278093 (LOC100278093), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001138068.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   ||||||=|||||||||||* targets:136   CUCGUCUCCUUCCUCCCCU   154 Target Full Sequence	2.5	Zea mays AT-hook motif nuclear-localized protein 1 (LOC100192880), mRNA	NA	coding protein	psRNATarget
BT034978.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   ||||||=|||||||||||* targets:136   CUCGUCUCCUUCCUCCCCU   154 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0030M23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682850.2	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   ||||||=|||||||||||* targets:204   CUCGUCUCCUUCCUCCCCU   222 Target Full Sequence	2.5	PREDICTED: Zea mays AT-hook motif nuclear-localized protein 1 (LOC100192880), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU975351.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   |||*||||||||||||||| targets:349   CUCCUCCCCUUCCUCCCCG   367 Target Full Sequence	1.0	Zea mays clone 488370 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT053943.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   |||*||||||||||||||| targets:360   CUCCUCCCCUUCCUCCCCG   378 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0058L07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152295.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   |||*||||||||||||||| targets:360   CUCCUCCCCUUCCUCCCCG   378 Target Full Sequence	1.0	Zea mays putative prolin-rich extensin-like receptor protein kinase family protein (LOC100279274), mRNA	NA	coding protein	psRNATarget
NM_001155481.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   |||||||||||||||||** targets:19   CUCGUCCCCUUCCUCCCGU   37 Target Full Sequence	2.5	Zea mays serine palmitoyltransferase 2 (LOC100282573), mRNA	NA	coding protein	psRNATarget
EU961513.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   |||||||||||||||||** targets:19   CUCGUCCCCUUCCUCCCGU   37 Target Full Sequence	2.5	Zea mays clone 236047 serine palmitoyltransferase 2 mRNA, complete cds	NA	coding protein	psRNATarget
EU947102.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   |||*|||||||||||=||| targets:122   CUCCUCCCCUUCCUCUCCG   140 Target Full Sequence	2.5	Zea mays clone 327142 mRNA sequence	NA	coding protein	psRNATarget
NM_001165468.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   |||*||||||||||||=|| targets:749   CUCUUCCCCUUCCUCCUCG   767 Target Full Sequence	2.5	Zea mays putative HLH DNA-binding domain superfamily protein (LOC100303849), mRNA	NA	coding protein	psRNATarget
EU953456.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   |||*||||||||||||=|| targets:749   CUCUUCCCCUUCCUCCUCG   767 Target Full Sequence	2.5	Zea mays clone 1413787 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU975018.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   ||||*||||||||||||=| targets:434   CUCGGCCCCUUCCUCCCUG   452 Target Full Sequence	2.5	Zea mays clone 465191 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548846.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   ||||*||||||||||||=| targets:425   CUCGACCCCUUCCUCCCUG   443 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109944171 (LOC109944171), mRNA	NA	coding protein	psRNATarget
BT038759.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   ||||*||||||||||||=| targets:422   CUCGGCCCCUUCCUCCCUG   440 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0323L03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150102.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   |*|||||=||||||||||| targets:263   CCCGUCCUCUUCCUCCCCG   281 Target Full Sequence	2.5	Zea mays uncharacterized LOC100276272 (LOC100276272), mRNA	NA	coding protein	psRNATarget
EU961060.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   |*|||||=||||||||||| targets:263   CCCGUCCUCUUCCUCCCCG   281 Target Full Sequence	2.5	Zea mays clone 232553 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU960453.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   |*|||||=||||||||||| targets:101   CACGUCCUCUUCCUCCCCG   119 Target Full Sequence	2.5	Zea mays clone 225004 tyrosyl-tRNA synthetase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001155227.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   |*|||||=||||||||||| targets:101   CACGUCCUCUUCCUCCCCG   119 Target Full Sequence	2.5	Zea mays tyrosyl-tRNA synthetase (LOC100282315), mRNA	NA	coding protein	psRNATarget
BT041733.2	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   ||||*||||||||||||=| targets:332   CUCGACCCCUUCCUCCCUG   350 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0040N04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148150.2	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   ||||*||||||||||||=| targets:332   CUCGACCCCUUCCUCCCUG   350 Target Full Sequence	2.5	Zea mays uncharacterized LOC100273741 (LOC100273741), mRNA	NA	coding protein	psRNATarget
EU956675.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   |||*|||||||||||=||| targets:321   CUCCUCCCCUUCCUCUCCG   339 Target Full Sequence	2.5	Zea mays clone 1570425 receptor protein kinase PERK1 mRNA, complete cds	NA	coding protein	psRNATarget
EU957382.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   *|||||*|||||||||||| targets:39   GUCGUCGCCUUCCUCCCCG   57 Target Full Sequence	2.5	Zea mays clone 1590322 mRNA sequence	NA	coding protein	psRNATarget
BT064110.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   *|||||*|||||||||||| targets:19   GUCGUCGCCUUCCUCCCCG   37 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0138I20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008679474.2	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   ||||||*|||||||||||* targets:44   CUCGUCGCCUUCCUCCCCU   62 Target Full Sequence	2.5	PREDICTED: Zea mays Dihydroxy-acid dehydratase chloroplastic (LOC100384514), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001154308.2	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   *|||||*|||||||||||| targets:43   GUCGUCGCCUUCCUCCCCG   61 Target Full Sequence	2.5	Zea mays SLT1 protein (LOC100281390), mRNA	NA	coding protein	psRNATarget
EU956577.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   *|||||*|||||||||||| targets:48   GUCGUCGCCUUCCUCCCCG   66 Target Full Sequence	2.5	Zea mays clone 1567115 SLT1 protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001177037.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   ||||||*|||||||||||* targets:23   CUCGUCGCCUUCCUCCCCU   41 Target Full Sequence	2.5	Zea mays Dihydroxy-acid dehydratase chloroplastic (LOC100384514), mRNA	NA	coding protein	psRNATarget
BT083554.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   ||||||*|||||||||||* targets:23   CUCGUCGCCUUCCUCCCCU   41 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0011I12 mRNA, complete cds	NA	coding protein	psRNATarget
EU971366.1	ncRNA:19   GAGCAGGGGAAGGAGGGGC   1   ||||||*|||||||||||* targets:17   CUCGUCGCCUUCCUCCCCU   35 Target Full Sequence	2.5	Zea mays clone 363044 mRNA sequence	NA	coding protein	psRNATarget