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BaseInfo

ncRNA ID	osa-miR3980a-3p
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	miRBase
Length	21
Mature sequence(if miRNA)	NA - CUGGCCGAGGCCGUCGAUUCU - NA
Stem-loop(if miRNA)	UCU    C                    A      -----G    ----  UCCCCUUGAGCUCGGGAGACGCAUUCUGCUUUGGC GCGGCGUCUUCCUCU   UCCC UUAGGAGAAUCGACGGCCUC GUCAGG      GCGC    CU                                   U |||||||||||||||   |||| |||||||||||||||||||| ||||||      ||||    || CGCCGCAGAAGGAGA   AGGG GAUCCUCUUAGCUGCCGGAG CGGUCC      ACAG    AG                                   G                ---    C                    C      UGCUUC    AUUA  GCCACUGCUGUUCCCGGGCGGCCUCGGACGCGGGG
Stem-loop sequence	GCGGCGUCUUCCUCUUCUUCCCCUUAGGAGAAUCGACGGCCUCAGUCAGGGGCGCCUUCCCCUUGAGCUCGGGAGACGCAUUCUGCUUUGGCUGGGGGCGCAGGCUCCGGCGGGCCCUUGUCGUCACCGGAAUUAGACACUUCGUCCUGGCCGAGGCCGUCGAUUCUCCUAGCGGGAAGAGGAAGACGCCGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015760218.1	ncRNA:21   UCUUAGCUGCCGGAGCCGGUC   1   =*|||||=|||||*||||||| targets:272   GCAAUCGGCGGCCACGGCCAG   292 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable galacturonosyltransferase 7 (LOC4349640), transcript variant X1, mRNA	probable galacturonosyltransferase 7(LOC4349640)	coding protein	psRNATarget
XM_015760219.1	ncRNA:21   UCUUAGCUGCCGGAGCCGGUC   1   =*|||||=|||||*||||||| targets:272   GCAAUCGGCGGCCACGGCCAG   292 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable galacturonosyltransferase 7 (LOC4349640), transcript variant X2, mRNA	probable galacturonosyltransferase 7(LOC4349640)	coding protein	psRNATarget
AK105411.1	ncRNA:21   UCUUAGCUGCCGGAGCCGGUC   1   =*|||||=|||||*||||||| targets:131   GCAAUCGGCGGCCACGGCCAG   151 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-123-G06, full insert sequence	NA	coding protein	psRNATarget
XM_015795175.1	ncRNA:21   UCUUAGCUGCCGGAGCCGGUC   1   =***|||=||||||||||||| targets:738   GUCCUCGGCGGCCUCGGCCAG   758 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group cytokinin dehydrogenase 11 (LOC4345764), mRNA	cytokinin dehydrogenase 11(LOC4345764)	coding protein	psRNATarget
XM_015777171.1	ncRNA:21   UCUUAGCUGCCGGAGCCGGUC   1   =**|||||||||||||||*|| targets:259   GUCAUCGACGGCCUCGGCGAG   279 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative linoleate 9S-lipoxygenase 3 (LOC4333821), mRNA	putative linoleate 9S-lipoxygenase 3(LOC4333821)	coding protein	psRNATarget
AK058651.1	ncRNA:21   UCUUAGCUGCCGGAGCCGGUC   1   ***|*|||||||||||||||| targets:602   CUCACCGACGGCCUCGGCCAG   622 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-018-F02, full insert sequence	NA	coding protein	psRNATarget
XM_015793351.1	ncRNA:21   UCUUAGCUGCCGGAGCCGGUC   1   ***|*|||||||||||||||| targets:596   CUCACCGACGGCCUCGGCCAG   616 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group pectinesterase (LOC4345722), mRNA	pectinesterase(LOC4345722)	coding protein	psRNATarget
XM_015784452.1	ncRNA:21   UCUUAGCUGCCGGAGCCGGUC   1   |**=||*|||||||||||||| targets:390   ACCGUCUACGGCCUCGGCCAG   410 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group cysteine-rich receptor-like protein kinase 2 (LOC4337704), mRNA	cysteine-rich receptor-like protein kinase 2(LOC4337704)	coding protein	psRNATarget
CT836422.1	ncRNA:21   UCUUAGCUGCCGGAGCCGGUC   1   |**=||*|||||||||||||| targets:343   ACCGUCUACGGCCUCGGCCAG   363 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA218N11, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:21113019 "Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)"; Li T, Li H, Zhang YX, Liu JY; Nucleic Acids Res. 39:2821-2833(2011).