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BaseInfo

ncRNA ID	novel_zma_miR3798
Species	Zea mays
Class	miRNA
Genome position	Chr4:233329506-233329654 [-]
Reference genome	RefGen_v4
Source	SRR2287031
Length	23
Mature sequence(if miRNA)	1 - UUGGUGUUGUUGAAUGGAUGGUU - 23
Stem-loop(if miRNA)	---UUA            CUU    CCAUAGUGUCAUAGAAGGCUUAACGACUAUUUGAUGACCAUGUAAUGGAAC       CUAUUUAACAAC   UUGG                                                   A       ||||||||||||   ||||       GGUAAGUUGUUG   GGUU                                                   U UUGGUA            --U    UCUGUUAACCUAUUUAAUCGUUGUGAUCCUAUCAUGGUGUAUUGUGUAAUA
Stem-loop sequence	UUACUAUUUAACAACCUUUUGGCCAUAGUGUCAUAGAAGGCUUAACGACUAUUUGAUGACCAUGUAAUGGAACAUAUAAUGUGUUAUGUGGUACUAUCCUAGUGUUGCUAAUUUAUCCAAUUGUCUUUGGUGUUGUUGAAUGGAUGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ057134.1	ncRNA:23   UUGGUAGGUAAGUUGUUGUGGUU   1   *==||||||||||||||||*||= targets:247   CGUCAUCCAUUCAACAACAGCAG   269 Target Full Sequence	2.5	TSA: Zea mays contig58256, mRNA sequence	NA	coding protein	psRNATarget
EU975499.1	ncRNA:23   UUGGUAGGUAAGUUGUUGUGGUU   1   *==||||||||||||||||*||= targets:332   CGUCAUCCAUUCAACAACAGCAG   354 Target Full Sequence	2.5	Zea mays clone 490940 mRNA sequence	NA	coding protein	psRNATarget
BT043299.1	ncRNA:23   UUGGUAGGUAAGUUGUUGUGGUU   1   *==||||||||||||||||*||= targets:952   CGUCAUCCAUUCAACAACAGCAG   974 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0150H04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001254789.2	ncRNA:23   UUGGUAGGUAAGUUGUUGUGGUU   1   *==||||||||||||||||*||= targets:996   CGUCAUCCAUUCAACAACAGCAG   1018 Target Full Sequence	2.5	Zea mays GDP-mannose transporter GONST5 (magi100893), mRNA	NA	coding protein	psRNATarget
EU964985.1	ncRNA:23   UUGGUAGGUAAGUUGUUGUGGUU   1   *==||||||||||||||||*||= targets:994   CGUCAUCCAUUCAACAACAGCAG   1016 Target Full Sequence	2.5	Zea mays clone 282952 organic anion transporter mRNA, complete cds	NA	coding protein	psRNATarget
BT055516.1	ncRNA:23   UUGGUAGGUAAGUUGUUGUGGUU   1   *==||||||||||||||||*||= targets:1030   CGUCAUCCAUUCAACAACAGCAG   1052 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0027F20 mRNA, complete cds	NA	coding protein	psRNATarget
EU971252.1	ncRNA:23   UUGGUAGGUAAGUUGUUGUGGUU   1   *==||||||||||||||||*||= targets:1586   CGUCAUCCAUUCAACAACAGCAG   1608 Target Full Sequence	2.5	Zea mays clone 360410 mRNA sequence	NA	coding protein	psRNATarget
AY104185.1	ncRNA:23   UUGGUAGGUAAGUUGUUGUGGUU   1   *==||||||||||||||||*||= targets:322   CGUCAUCCAUUCAACAACAGCAG   344 Target Full Sequence	2.5	Zea mays PCO101622 mRNA sequence	NA	coding protein	psRNATarget