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BaseInfo

ncRNA ID	novel_zma_miR3788
Species	Zea mays
Class	miRNA
Genome position	Chr3:161966896-161966953 [+]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2287159;SRR2287160;SRR2287162
Length	24
Mature sequence(if miRNA)	1 - GAUUGGAGAGGAUUGAGGGGGAAA - 24
Stem-loop(if miRNA)	--               A         UA   GAUUGGAGAGGAUUG GGGGGAAAU  G   ||||||||||||||| |||||||||   CUAACUUCUCCUAAC CUCCCUUUA  U UC               A         CU
Stem-loop sequence	GAUUGGAGAGGAUUGAGGGGGAAAUUAGUUCAUUUCCCUCACAAUCCUCUUCAAUCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406392.1	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   |||=||||||||||||||||=||| targets:48   UUUUCCCCUCAAUCCUCUCCGAUC   71 Target Full Sequence	1.5	Sequence 4517 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238522.1	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   |||=||||||||||||||||=||| targets:48   UUUUCCCCUCAAUCCUCUCCGAUC   71 Target Full Sequence	1.5	Sequence 4517 from Patent EP2985353	NA	coding protein	psRNATarget
JB166853.1	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   |||=||||||||||||||||=||| targets:48   UUUUCCCCUCAAUCCUCUCCGAUC   71 Target Full Sequence	1.5	Sequence 4517 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001352049.1	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   |||=||||||||||||||||=||| targets:547   UUUUCCCCUCAAUCCUCUCCGAUC   570 Target Full Sequence	1.5	Zea mays uncharacterized LOC100284194 (pco105859), transcript variant 2, mRNA	NA	coding protein	psRNATarget
XM_020547779.1	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   |||=||||||||||||||||=||| targets:575   UUUUCCCCUCAAUCCUCUCCGAUC   598 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547780.1	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   |||=||||||||||||||||=||| targets:577   UUUUCCCCUCAAUCCUCUCCGAUC   600 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539542.1	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   |||=|=|||||||=|||||||||| targets:130   UUUUCUCCUCAAUUCUCUCCAAUC   153 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008651348.2	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   |||=|=|||||||=|||||||||| targets:130   UUUUCUCCUCAAUUCUCUCCAAUC   153 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020539541.1	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   |||=|=|||||||=|||||||||| targets:130   UUUUCUCCUCAAUUCUCUCCAAUC   153 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008672733.2	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   |||||*|||||||||||||||||| targets:2427   UUUCCACCUCAAUCCUCUCCAAUC   2450 Target Full Sequence	1.0	PREDICTED: Zea mays L-type lectin-domain containing receptor kinase IV.1 (LOC103648246), mRNA	NA	coding protein	psRNATarget
EU942844.1	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   |||||*||||||||||||=||||| targets:193   UUUCCACCUCAAUCCUCUUCAAUC   216 Target Full Sequence	2.5	Zea mays clone 1540330 mRNA sequence	NA	coding protein	psRNATarget
EU941872.1	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   |||||*|||||||||||||||||* targets:93   UUUCCACCUCAAUCCUCUCCAAUA   116 Target Full Sequence	2.0	Zea mays clone 1471472 mRNA sequence	NA	coding protein	psRNATarget
XM_020539803.1	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   ||||=*|||||||||||||||||= targets:834   UUUCUACCUCAAUCCUCUCCAAUU   857 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized protein, chloroplastic-like (LOC103636217), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001347002.1	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   ||||=*|||||||||||||||||= targets:1144   UUUCUACCUCAAUCCUCUCCAAUU   1167 Target Full Sequence	2.0	Zea mays uncharacterized protein, chloroplastic-like (LOC103636217), mRNA	NA	coding protein	psRNATarget
XM_008658575.2	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   ||||=*|||||||||||||||||= targets:1156   UUUCUACCUCAAUCCUCUCCAAUU   1179 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized protein, chloroplastic-like (LOC103636217), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008671926.2	ncRNA:24   AAAGGG-GGAGUUAGGAGAGGUUAG   1   *||||=-|||||||||||||||||| targets:1063   AUUCCUACCUCAAUCCUCUCCAAUC   1087 Target Full Sequence	3.0	PREDICTED: Zea mays hypothetical protein (LOC103647382), mRNA	NA	coding protein	psRNATarget
BT088155.1	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   ||||=|=||||||||*|||||||| targets:1461   UUUCUCUCUCAAUCCCCUCCAAUC   1484 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
JB163954.1	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   **|||||||||||||*|||||||| targets:30   CAUCCCCCUCAAUCCCCUCCAAUC   53 Target Full Sequence	1.5	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
HI403493.1	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   **|||||||||||||*|||||||| targets:30   CAUCCCCCUCAAUCCCCUCCAAUC   53 Target Full Sequence	1.5	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   **|||||||||||||*|||||||| targets:30   CAUCCCCCUCAAUCCCCUCCAAUC   53 Target Full Sequence	1.5	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235420.1	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   ||||=|*||||||||*|||||||| targets:68   UUUCUCACUCAAUCCCCUCCAAUC   91 Target Full Sequence	2.5	Sequence 1415 from Patent EP2985353	NA	coding protein	psRNATarget
JB163751.1	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   ||||=|*||||||||*|||||||| targets:68   UUUCUCACUCAAUCCCCUCCAAUC   91 Target Full Sequence	2.5	Sequence 1415 from Patent EP2559767	NA	coding protein	psRNATarget
HI403290.1	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   ||||=|*||||||||*|||||||| targets:68   UUUCUCACUCAAUCCCCUCCAAUC   91 Target Full Sequence	2.5	Sequence 1415 from Patent EP2074227	NA	coding protein	psRNATarget
EZ055746.1	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   |||=|*|||||||||*|||||||| targets:73   UUUUCACCUCAAUCCCCUCCAAUC   96 Target Full Sequence	2.5	TSA: Zea mays contig56868, mRNA sequence	NA	coding protein	psRNATarget
AY110351.1	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   |||=|*|||||||||*|||||||| targets:39   UUUUCACCUCAAUCCCCUCCAAUC   62 Target Full Sequence	2.5	Zea mays CL33021_1 mRNA sequence	NA	coding protein	psRNATarget
XM_020547439.1	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   **|||||=|||||||*|||||||| targets:3909   AAUCCCCUUCAAUCCACUCCAAUC   3932 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163816.1	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   **|=|=|||||||||*|||||||| targets:28   CAUUCUCCUCAAUCCCCUCCAAUC   51 Target Full Sequence	2.5	Sequence 1480 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235485.1	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   **|=|=|||||||||*|||||||| targets:28   CAUUCUCCUCAAUCCCCUCCAAUC   51 Target Full Sequence	2.5	Sequence 1480 from Patent EP2985353	NA	coding protein	psRNATarget
HI403355.1	ncRNA:24   AAAGGGGGAGUUAGGAGAGGUUAG   1   **|=|=|||||||||*|||||||| targets:28   CAUUCUCCUCAAUCCCCUCCAAUC   51 Target Full Sequence	2.5	Sequence 1480 from Patent EP2074227	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:24   AA--AGGGGGAGUUAGGAGAGGUUAG   1   ||--|==||||=|||||*|||||||| targets:73   UUACUUUCCCUUAAUCCCCUCCAAUC   98 Target Full Sequence	2.5	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget