Search result

BaseInfo

ncRNA ID	novel_zma_miR3784
Species	Zea mays
Class	miRNA
Genome position	Chr3:100573476-100573570 [+]
Reference genome	RefGen_v4
Source	SRR2287031
Length	24
Mature sequence(if miRNA)	72 - AAUACAAGUGGAUUGAGGUCAAUA - 95
Stem-loop(if miRNA)	--               A                 GG      A      UUGACCUCAAUCCAC UGUGUUGAGGUGGAUUG  GUGUAA UUAG   ||||||||||||||| |||||||||||||||||  |||||| |||U   AACUGGAGUUAGGUG ACAUAACUCCACCUAAC  CACAUU AAUU AU               A                 AU      G
Stem-loop sequence	UUGACCUCAAUCCACAUGUGUUGAGGUGGAUUGGGGUGUAAAUUAGUUUAAGUUACACUACAAUCCACCUCAAUACAAGUGGAUUGAGGUCAAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ239375.1	ncRNA:24   AUAACUGGAGUUAGGUGAACAUAA   1   |||||||||||||||||||||||| targets:20   UAUUGACCUCAAUCCACUUGUAUU   43 Target Full Sequence	0.0	Sequence 5370 from Patent EP2985353	NA	coding protein	psRNATarget
HI407245.1	ncRNA:24   AUAACUGGAGUUAGGUGAACAUAA   1   |||||||||||||||||||||||| targets:20   UAUUGACCUCAAUCCACUUGUAUU   43 Target Full Sequence	0.0	Sequence 5370 from Patent EP2074227	NA	coding protein	psRNATarget
JB167706.1	ncRNA:24   AUAACUGGAGUUAGGUGAACAUAA   1   |||||||||||||||||||||||| targets:20   UAUUGACCUCAAUCCACUUGUAUU   43 Target Full Sequence	0.0	Sequence 5370 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235147.1	ncRNA:24   AUAACUGGAGUUAGGUGAACAUAA   1   |||||||||||||||||*|||||| targets:5   UAUUGACCUCAAUCCACAUGUAUU   28 Target Full Sequence	1.5	Sequence 1142 from Patent EP2985353	NA	coding protein	psRNATarget
HI403017.1	ncRNA:24   AUAACUGGAGUUAGGUGAACAUAA   1   |||||||||||||||||*|||||| targets:5   UAUUGACCUCAAUCCACAUGUAUU   28 Target Full Sequence	1.5	Sequence 1142 from Patent EP2074227	NA	coding protein	psRNATarget
JB163478.1	ncRNA:24   AUAACUGGAGUUAGGUGAACAUAA   1   |||||||||||||||||*|||||| targets:5   UAUUGACCUCAAUCCACAUGUAUU   28 Target Full Sequence	1.5	Sequence 1142 from Patent EP2559767	NA	coding protein	psRNATarget
JB163411.1	ncRNA:24   AUAACUGGAGUUAGGUGAACAUAA   1   *||||||||||||||||*|||||| targets:5   CAUUGACCUCAAUCCACAUGUAUU   28 Target Full Sequence	1.5	Sequence 1075 from Patent EP2559767	NA	coding protein	psRNATarget
HI402950.1	ncRNA:24   AUAACUGGAGUUAGGUGAACAUAA   1   *||||||||||||||||*|||||| targets:5   CAUUGACCUCAAUCCACAUGUAUU   28 Target Full Sequence	1.5	Sequence 1075 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235080.1	ncRNA:24   AUAACUGGAGUUAGGUGAACAUAA   1   *||||||||||||||||*|||||| targets:5   CAUUGACCUCAAUCCACAUGUAUU   28 Target Full Sequence	1.5	Sequence 1075 from Patent EP2985353	NA	coding protein	psRNATarget
JB163470.1	ncRNA:24   AUAACUGGAGUUAGGUGAACAUAA   1   ||||*||||||||||||*|||||| targets:5   UAUUCACCUCAAUCCACAUGUAUU   28 Target Full Sequence	1.5	Sequence 1134 from Patent EP2559767	NA	coding protein	psRNATarget
HI403009.1	ncRNA:24   AUAACUGGAGUUAGGUGAACAUAA   1   ||||*||||||||||||*|||||| targets:5   UAUUCACCUCAAUCCACAUGUAUU   28 Target Full Sequence	1.5	Sequence 1134 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235139.1	ncRNA:24   AUAACUGGAGUUAGGUGAACAUAA   1   ||||*||||||||||||*|||||| targets:5   UAUUCACCUCAAUCCACAUGUAUU   28 Target Full Sequence	1.5	Sequence 1134 from Patent EP2985353	NA	coding protein	psRNATarget
HI402996.1	ncRNA:24   AUAACUGGAGUUAGGUGAACAUAA   1   ||||*||||||||||||*|||||| targets:5   UAUUCACCUCAAUCCACAUGUAUU   28 Target Full Sequence	1.5	Sequence 1121 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235126.1	ncRNA:24   AUAACUGGAGUUAGGUGAACAUAA   1   ||||*||||||||||||*|||||| targets:5   UAUUCACCUCAAUCCACAUGUAUU   28 Target Full Sequence	1.5	Sequence 1121 from Patent EP2985353	NA	coding protein	psRNATarget
JB163457.1	ncRNA:24   AUAACUGGAGUUAGGUGAACAUAA   1   ||||*||||||||||||*|||||| targets:5   UAUUCACCUCAAUCCACAUGUAUU   28 Target Full Sequence	1.5	Sequence 1121 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235067.1	ncRNA:24   AUAACUGGAGUUAGGUGAACAUAA   1   *||*|||||||||||||*|||||| targets:5   CAUAGACCUCAAUCCACAUGUAUU   28 Target Full Sequence	1.5	Sequence 1062 from Patent EP2985353	NA	coding protein	psRNATarget
HI402937.1	ncRNA:24   AUAACUGGAGUUAGGUGAACAUAA   1   *||*|||||||||||||*|||||| targets:5   CAUAGACCUCAAUCCACAUGUAUU   28 Target Full Sequence	1.5	Sequence 1062 from Patent EP2074227	NA	coding protein	psRNATarget
JB163398.1	ncRNA:24   AUAACUGGAGUUAGGUGAACAUAA   1   *||*|||||||||||||*|||||| targets:5   CAUAGACCUCAAUCCACAUGUAUU   28 Target Full Sequence	1.5	Sequence 1062 from Patent EP2559767	NA	coding protein	psRNATarget