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BaseInfo

ncRNA ID novel_zma_miR3781
Species Zea mays
Class miRNA
Genome position Chr10:114458040-114458115 [+]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 53 - AUCCAGCUCAAUACAUGUGAAUUG - 76
Stem-loop(if miRNA) -AUA  -           G  C      -     A   
    UC UAUGUGUUGAG UG AUUGGG UGUAA UUAA
    || ||||||||||| || |||||| ||||| |||U
    AG GUACAUAACUC AC UAACCC ACAUU AAUU
GUUA  U           G  C      U     A   
Stem-loop sequence AUAUCUAUGUGUUGAGGUGCAUUGGGUGUAAAUUAAUUUAAAUUACAUCCCAAUCCAGCUCAAUACAUGUGAAUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403198.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  ||||||||=|||||||||*|||||
targets:15   CAAUUCACGUGUAUUGAGGUGGAU   38

2.5 Sequence 1323 from Patent EP2074227 NA coding protein psRNATarget
JB163659.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  ||||||||=|||||||||*|||||
targets:15   CAAUUCACGUGUAUUGAGGUGGAU   38

2.5 Sequence 1323 from Patent EP2559767 NA coding protein psRNATarget
LQ235328.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  ||||||||=|||||||||*|||||
targets:15   CAAUUCACGUGUAUUGAGGUGGAU   38

2.5 Sequence 1323 from Patent EP2985353 NA coding protein psRNATarget
JB163857.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  ||||*|||||||||||||*|||||
targets:27   CAAUACACAUGUAUUGAGGUGGAU   50

1.5 Sequence 1521 from Patent EP2559767 NA coding protein psRNATarget
LQ235526.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  ||||*|||||||||||||*|||||
targets:27   CAAUACACAUGUAUUGAGGUGGAU   50

1.5 Sequence 1521 from Patent EP2985353 NA coding protein psRNATarget
HI403396.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  ||||*|||||||||||||*|||||
targets:27   CAAUACACAUGUAUUGAGGUGGAU   50

1.5 Sequence 1521 from Patent EP2074227 NA coding protein psRNATarget
HI403009.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  ||||*|||||||||||||||*|||
targets:14   CAAUCCACAUGUAUUGAGCUAGAU   37

1.5 Sequence 1134 from Patent EP2074227 NA coding protein psRNATarget
LQ235139.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  ||||*|||||||||||||||*|||
targets:14   CAAUCCACAUGUAUUGAGCUAGAU   37

1.5 Sequence 1134 from Patent EP2985353 NA coding protein psRNATarget
JB163470.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  ||||*|||||||||||||||*|||
targets:14   CAAUCCACAUGUAUUGAGCUAGAU   37

1.5 Sequence 1134 from Patent EP2559767 NA coding protein psRNATarget
JB163398.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  ||||*|||||||||||||*|||||
targets:14   CAAUCCACAUGUAUUGAGGUGGAU   37

1.5 Sequence 1062 from Patent EP2559767 NA coding protein psRNATarget
LQ235067.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  ||||*|||||||||||||*|||||
targets:14   CAAUCCACAUGUAUUGAGGUGGAU   37

1.5 Sequence 1062 from Patent EP2985353 NA coding protein psRNATarget
HI402937.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  ||||*|||||||||||||*|||||
targets:14   CAAUCCACAUGUAUUGAGGUGGAU   37

1.5 Sequence 1062 from Patent EP2074227 NA coding protein psRNATarget
HI403051.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  ||||*|||||||||||||*|||||
targets:14   CAAUCCACAUGUAUUGAGGUGGAU   37

1.5 Sequence 1176 from Patent EP2074227 NA coding protein psRNATarget
LQ235181.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  ||||*|||||||||||||*|||||
targets:14   CAAUCCACAUGUAUUGAGGUGGAU   37

1.5 Sequence 1176 from Patent EP2985353 NA coding protein psRNATarget
JB163512.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  ||||*|||||||||||||*|||||
targets:14   CAAUCCACAUGUAUUGAGGUGGAU   37

1.5 Sequence 1176 from Patent EP2559767 NA coding protein psRNATarget
LQ235080.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  ||||*|||||||||||||*|||||
targets:14   CAAUCCACAUGUAUUGAGGUGGAU   37

1.5 Sequence 1075 from Patent EP2985353 NA coding protein psRNATarget
JB163411.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  ||||*|||||||||||||*|||||
targets:14   CAAUCCACAUGUAUUGAGGUGGAU   37

1.5 Sequence 1075 from Patent EP2559767 NA coding protein psRNATarget
HI402950.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  ||||*|||||||||||||*|||||
targets:14   CAAUCCACAUGUAUUGAGGUGGAU   37

1.5 Sequence 1075 from Patent EP2074227 NA coding protein psRNATarget
HI403066.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  =|||*|||||||||||||*|||||
targets:14   UAAUCCACAUGUAUUGAGGUGGAU   37

1.5 Sequence 1191 from Patent EP2074227 NA coding protein psRNATarget
JB163527.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  =|||*|||||||||||||*|||||
targets:14   UAAUCCACAUGUAUUGAGGUGGAU   37

1.5 Sequence 1191 from Patent EP2559767 NA coding protein psRNATarget
LQ235196.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  =|||*|||||||||||||*|||||
targets:14   UAAUCCACAUGUAUUGAGGUGGAU   37

1.5 Sequence 1191 from Patent EP2985353 NA coding protein psRNATarget
JB163427.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  ||||*=||||||||||||*|||||
targets:14   CAAUCUACAUGUAUUGAGGUGGAU   37

2.5 Sequence 1091 from Patent EP2559767 NA coding protein psRNATarget
HI402966.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  ||||*=||||||||||||*|||||
targets:14   CAAUCUACAUGUAUUGAGGUGGAU   37

2.5 Sequence 1091 from Patent EP2074227 NA coding protein psRNATarget
LQ235096.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  ||||*=||||||||||||*|||||
targets:14   CAAUCUACAUGUAUUGAGGUGGAU   37

2.5 Sequence 1091 from Patent EP2985353 NA coding protein psRNATarget
JB163947.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  =|||*|||||||||||||*|||||
targets:11   UAAUCCACAUGUAUUGAGGUGGAU   34

1.5 Sequence 1611 from Patent EP2559767 NA coding protein psRNATarget
HI403486.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  =|||*|||||||||||||*|||||
targets:11   UAAUCCACAUGUAUUGAGGUGGAU   34

1.5 Sequence 1611 from Patent EP2074227 NA coding protein psRNATarget
LQ235616.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  =|||*|||||||||||||*|||||
targets:11   UAAUCCACAUGUAUUGAGGUGGAU   34

1.5 Sequence 1611 from Patent EP2985353 NA coding protein psRNATarget
EZ063549.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  *|||*|||||||||||||*|||||
targets:101   AAAUCCACAUGUAUUGAGGUGGAU   124

1.5 TSA: Zea mays contig64671, mRNA sequence NA coding protein psRNATarget
LQ235253.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  *|||*|||||||||||||*|||||
targets:14   GAAUCCACAUGUAUUGAGAUGGAU   37

1.5 Sequence 1248 from Patent EP2985353 NA coding protein psRNATarget
JB163584.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  *|||*|||||||||||||*|||||
targets:14   GAAUCCACAUGUAUUGAGAUGGAU   37

1.5 Sequence 1248 from Patent EP2559767 NA coding protein psRNATarget
HI403123.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  *|||*|||||||||||||*|||||
targets:14   GAAUCCACAUGUAUUGAGAUGGAU   37

1.5 Sequence 1248 from Patent EP2074227 NA coding protein psRNATarget
LQ239375.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  ||||*|||*|||||||||*|||||
targets:29   CAAUCCACUUGUAUUGAGGUGGAU   52

2.5 Sequence 5370 from Patent EP2985353 NA coding protein psRNATarget
JB167706.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  ||||*|||*|||||||||*|||||
targets:29   CAAUCCACUUGUAUUGAGGUGGAU   52

2.5 Sequence 5370 from Patent EP2559767 NA coding protein psRNATarget
HI407245.1
ncRNA:24   GUUAAGUGUACAUAACUCGACCUA   1
  ||||*|||*|||||||||*|||||
targets:29   CAAUCCACUUGUAUUGAGGUGGAU   52

2.5 Sequence 5370 from Patent EP2074227 NA coding protein psRNATarget